Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 seq5 113 5e-20 seq7 87.8 2e-12 seq3 87.8 2e-12 >seq2 Length=4282893 Score = 217 bits (240), Expect = 2e-51 Identities = 680/1045 (65%), Gaps = 25/1045 (2%) Strand=Plus/Minus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || |||||||| || ||||| | ||| | || | ||| ||||| || || || || || Sbjct 3326255 TCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTTCGAGTTGCGAGCC 3326196 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 || ||||| || | || || |||||| ||| || || ||||| || | ||| Sbjct 3326195 TCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 3326136 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459 || || || || || | | | || | | | |||| | |||| | || Sbjct 3326135 CAAATGTCGTGGAGCTTCTTAAAGTCGTACGACTGGTTCTCAATGTCGACAAAGGCAGGG 3326076 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 ||||| || || || | ||||| || || ||| || | |||||| | ||| Sbjct 3326075 AGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAATC 3326016 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 || || || | |||||| ||| || || || | | || ||||| ||| |||| Sbjct 3326015 TCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGTTG 3325956 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || ||||||||||||||| |||| || ||||| ||||| | || ||| || || Sbjct 3325955 GCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCG 3325896 Query 106640 TTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTT 106695 ||| | | || | | || | |||| ||| ||| | || | | |||||| | Sbjct 3325895 AACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCAGCACGCTCGTAGCT 3325840 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 106753 |||||||| ||||||||||| | | | |||||| ||| || || || | | Sbjct 3325839 CTCGTAGAGGGTCTCAAACTCCTC--CGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCG 3325782 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || | || | ||| | ||| | |||| || ||||||||||| ||||| || ||| Sbjct 3325781 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 3325722 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || |||| | || || || | ||| |||| || | || ||||| || | Sbjct 3325721 CAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 3325662 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 |||||||| || | || ||||||||||| ||||| || |||| || | | || Sbjct 3325661 TCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGG-- 3325604 Query 106934 CGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 | ||| ||| | || | || ||||| || ||||| | | |||| ||||| Sbjct 3325603 -GGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATG 3325545 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCA 107045 || | ||||| | || | ||| || || || ||| ||||| | |||| | | Sbjct 3325544 GGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGCGAA 3325487 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | |||||||| | || ||||| ||||| ||| ||||| || || || | | | Sbjct 3325486 TGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGA 3325427 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | |||||||||| || ||||| ||||| |||||| ||||||||| |||| Sbjct 3325426 GGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACA 3325367 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 |||| || || ||||| || ||||||||||| || | ||||| | || || | Sbjct 3325366 TCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCT 3325307 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 ||||| || ||| ||||| | ||| ||||||| || |||||||| ||||||| Sbjct 3325306 CCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGG 3325247 Query 107286 CCACACGCATAAACATGTATTGGGG 107310 | |||||||||| ||||| ||||| Sbjct 3325246 CGACACGCATAATCATGTGCTGGGG 3325222 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/427 (66%), Gaps = 10/427 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||||||||| |||| ||||| ||||| ||||| || | ||| |||| ||| || Sbjct 1615542 CCGGTACCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGAAT 1615601 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 || || || || | ||||||||| | | ||||||||| | || | || || Sbjct 1615602 TCAGGCTCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAGAG 1615661 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGCA 168470 | ||||||| || | | | || || || ||| | ||||| | | | |||| Sbjct 1615662 TGAAAGATCGTGTGGGTCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGCAGCA 1615721 Query 168471 TCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTG 168530 |||||||||||| | ||||||||| || || || || || || ||||||| |||| Sbjct 1615722 TCCTTACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGTTG 1615781 Query 168531 TTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATAC--TTCAC 168588 || ||| | | | || | ||||| ||| | || || ||||| Sbjct 1615782 TTGCTACCGACAAACTTCTGCGCAAGACCGACAAT--GGTCATGAACAGAGACTGTTCAC 1615839 Query 168589 CATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCAT 168648 | |||||||| |||| || || | ||||| | | || || || ||||| || || | Sbjct 1615840 CGTGGTGGTATGCAGTGTTTTCGGAAACATAACCTCCAAGCTGAGCGACCTTGATCTCCT 1615899 Query 168649 CCTTGAGATT---CTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGAC 168705 |||||| || |||| ||||| ||| | | || || | ||| ||||||||||| Sbjct 1615900 TCTTGAGGTTACGCTTA---AAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAGAC 1615956 Query 168706 CATCCGC 168712 | || || Sbjct 1615957 CGTCGGC 1615963 >seq5 Length=2378914 Score = 113 bits (124), Expect = 5e-20 Identities = 263/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| ||||| || | ||| |||||||||||| | |||| || | |||||| || || Sbjct 2242610 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCAAT 2242551 Query 117156 GAGATTACATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 ||| ||| ||| || ||||| || |||| | | |||||| | || ||||| | Sbjct 2242550 GAGCG-ACACGGGGAGGGCGTCGGTGAGGAACTCCTGCTCAATGGCGACGGCCTCGCGGA 2242492 Query 117215 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGG 117274 ||| || ||| || || | ||| | ||| | |||| || || Sbjct 2242491 TGATCCTGTTGATGGTGTCCGGGTGGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGG 2242432 Query 117275 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTG 117334 |||| || |||||||||||| || || || || || || || |||||| || || | Sbjct 2242431 CAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 2242372 Query 117335 GCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||||| |||||||| | ||| | || | |||| || || || |||||||||||| Sbjct 2242371 GCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCA-AACGAGCCCGAGAAGAAGATA 2242313 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AA 117452 ||||| || ||||| || | || |||||||| || || |||| |||| | | Sbjct 2242312 CCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGA-CGAGTTCTTGTCCGAGAT 2242254 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCT 117481 ||| | | ||||| | |||||||||| Sbjct 2242253 CCAGTGGAGGGCCCAGTCGGCCTTCTTCT 2242225 >seq7 Length=1599831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 |||||| || || |||||||| || || |||| || || || ||| | | || | Sbjct 731237 CTTTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTGCTGT 731178 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 | || || ||||| || | ||| || ||||| ||||||||||| || || | | Sbjct 731177 CGCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACTCGGA 731118 Query 9482 GGCGGAACATTGGATG-AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | || || | | | ||||| || || | ||||| ||| |||| ||| || |||| Sbjct 731117 ACCCGA-CACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGCAGAG 731059 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||||| ||||| || |||| |||| |||||| || ||||||||||| || Sbjct 731058 TCTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACC 731004 >seq3 Length=3276928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||| ||||||||| || || || || || |||||||| | || Sbjct 1613932 GCAAAGTCGGTGTGGGTACCCTCATCGCGCGAGATGAGCTCGTTTGAGAATGTCAATCCG 1613873 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 |||||||||| || ||||| | ||| |||| || ||| || || || ||||||||||| Sbjct 1613872 CGCATGAGACCGCGTTTCTTGAGCCAGAAAATGGCCGCA-AACGAGCCCGAGAAGAAGAT 1613814 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCG 117422 ||||| ||||| || || |||| ||||| Sbjct 1613813 GCCCTCGACACAAGCGAAAGCAATGAGGCG 1613784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980527133880