Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 2e-11 >seq8 Length=1346441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCCGAA 30173 ||||| ||||| ||| | || || ||||| || | || || | || || || || || Sbjct 730392 AGCTGGTCCACGCCCTTGCCGGAATAGTCGTCCTCGCAGGTACCA-TAGTCGGCGCCAAA 730334 Query 30174 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30233 |||||||||||||| || ||||| ||||||||||| || || || ||| | ||| | Sbjct 730333 GTGCCTCCACTGGAAGCCATACACGGGTCCCAGGTCGCCTTCCCTCCGGTG-ACCAAGAC 730275 Query 30234 CCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30292 | | ||| | | || ||| |||||| || ||||||| || | ||||| |||| Sbjct 730274 CGACGCGGTCGAGGTACTCCCTGCTGCCGTTGCCGGCCCAGATGTTGATGCCCTTGTCGG 730215 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 |||| | | | || ||| | || ||| ||||| || |||||||| Sbjct 730214 CGAGCACCTGGCCGTCGGTGCAGCCCGAGACAAACCAGAGGAGCTCCTC 730166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617415739001