Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 345 8e-90 seq5 251 1e-61 seq3 95.1 2e-14 seq10 89.7 1e-12 >seq2 Length=4282893 Score = 345 bits (382), Expect = 8e-90 Identities = 1141/1748 (65%), Gaps = 71/1748 (4%) Strand=Plus/Minus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 ||| || | ||| || ||||| |||||| ||||| | | | | ||| ||||| | ||| Sbjct 3326862 CAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAACGCGCCACGGTCGGCGGCGAGGTC 3326803 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGG 212806 |||| | | |||| || | |||||| || |||||| |||| | || || || || || Sbjct 3326802 AATGACAGCCTTCTGCGAAACCTCCCAGACAGTCTTGTAGATGGCCTTCAGCTCGTCGGG 3326743 Query 212807 GAAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTC 212863 | | ||| |||| ||| | || || || | | ||| | || | | ||| || Sbjct 3326742 AATGTTGGGAATGTGCTGGATGGAACCACCCGAGGCAATGATGAGGTTCTT---CATCTC 3326686 Query 212864 CTCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTTGACCAGGTGAGGGTTGACTATCTGGA 212922 ||||| ||||| ||| | | ||| ||| || || ||| ||| | ||||| Sbjct 3326685 CTCGTCCCAGATGCCGAGGTTGATGAGGTCACG-GAGGAGCCAGGGGCAGACGACCTGGA 3326627 Query 212923 AGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGT 212982 ||||||| |||||||| | | ||||| | || ||||||||||| | || ||||| Sbjct 3326626 AGTCACCCGAGAGCACACGACGGGCGTAAAGCATCGAGGTGTAGGGCTCAAAGCACTCGT 3326567 Query 212983 TGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCC 213042 | || |||||||| | || ||| ||||||||||| || || || || ||| | Sbjct 3326566 TCCAGCCAAGAATCTGCGAGGTCGAGGCAGTGGGCATGGGCGCGACGAGCAGCGAGTTGC 3326507 Query 213043 TCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGT 213102 || ||||||| | | ||| | || ||||| | ||||||||| | | | || Sbjct 3326506 GGACACCGTGCTGGGCAATGTTGGCACGGAGCTCGGTCCAGTCCCAGAGGTCGGTGGGGA 3326447 Query 213103 CCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCT 213162 | || |||||||||||| ||| | |||| | | ||| ||||| Sbjct 3326446 CA-CG--------GTTCCACATGTCGGGCTGGAGCTTGCCCTGCGAGATGGGCGAGCCCT 3326396 Query 213163 GGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGT 213222 ||| |||| ||| ||| | ||||| ||||| ||| || || |||| || ||||||| Sbjct 3326395 CGTACGAGGGGTACTTGCCCTTCTCCTGGGCCATCTCACACGAAGCCTCGAGAGCAGCGT 3326336 Query 213223 AGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCA 213282 ||||||||| || || |||| |||||||| || | || || |||||||| Sbjct 3326335 GGTAGATGGTCTCGAAGATCTTGAGGTTGAGCTCACGAGCAGCGGGCGAGTCGAAGGGCA 3326276 Query 213283 TCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGT 213341 | || || || | || || || |||||||| || | |||| ||| | ||| Sbjct 3326275 GGCGGAGAGCCATG-AAGGCGTCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGG 3326217 Query 213342 CTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 | || ||| || ||| |||| ||||| | |||||| |||| | |||| || || Sbjct 3326216 CGCATGTTCGAGTTGCGAGC-CTCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTC 3326158 Query 213401 GAGGTTGCGGGTGGCCACTTTGG---TGACATGGGCCAGGTACTCGTGATTGAACACGTA 213457 |||||| |||| | || ||| || | ||| || | || | | || | Sbjct 3326157 GAGGTTCTTGGTGACGACCTTGCAAATGTCGTGG---AGCTTCTTAAAGTCGTACGACTG 3326101 Query 213458 GCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 | | | | ||||| |||| ||||| || ||| |||||||| ||||| ||||| Sbjct 3326100 GTTCTCAATGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTC 3326041 Query 213518 CT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCA 213576 | | | | | | |||||| || ||||| ||||| |||||| | |||||| || | Sbjct 3326040 GTCGGGCGAC-GAGTACTCGATAATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCGA 3325982 Query 213577 GGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGG 213636 ||| ||| ||||| ||||| | |||||| | ||||||||||||||| ||||| || | Sbjct 3325981 GGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAG 3325922 Query 213637 TCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGA--------CCAC 213688 |||| ||||| | | || || | |||||| | | |||||||| | || Sbjct 3325921 TCTCGGTCTGGGCCTCGAGGATGGCGAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGAC 3325862 Query 213689 CCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCC 213748 || || |||| | | |||||| || |||||||| | || || | | Sbjct 3325861 CCT--TGCCAGCAC-GCTCGTAGC-TC-------TCGTAGAGGGTCTCAAACTCCT---C 3325816 Query 213749 CCAG---ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTC 213805 | || || | | || || || || ||||| ||||||||| ||||||| ||||| Sbjct 3325815 CGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTC 3325756 Query 213806 ATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGT 213865 | ||| | || |||||| ||||| |||| ||| || ||| ||||||||| | || Sbjct 3325755 GGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAACAGGTCACGGGC 3325696 Query 213866 CCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTG 213925 | ||| ||| || ||| |||||||| || || |||||||||| ||||||||| Sbjct 3325695 ACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGTCAAAGACGTCCGCGTG 3325636 Query 213926 CCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCAC-CA 213981 ||| ||||| | ||||||||||||||| || || | |||| || |||||||| || | Sbjct 3325635 CCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTA 3325576 Query 213982 GCCTG-GCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040 || | | || | | || ||| || | ||| || | |||||||| | |||||| Sbjct 3325575 GCGAGCGGTGGCA--TCGTAGGCGCGGAGCATGGGGACGATACCGTTGGAGTAACCGTTG 3325518 Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100 || || || || |||||||| ||| | | |||| ||| ||| || || || || Sbjct 3325517 GTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTGTGGATGTGGAGACCGATACCGCCA 3325458 Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCA 214160 || |||||||||| ||||||| | | | || || ||| ||| | ||| ||| Sbjct 3325457 GCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCAATGGAGTCG 3325398 Query 214161 TCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAA 214220 || | | | | | |||||| ||| | |||||| | | || | |||||| Sbjct 3325397 TCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGAGGGGTACCGGCGTTGAAG 3325338 Query 214221 AGCGTGGGGCTGGCATGGATCATAAACT---TGTTAGAGAGGAGCCTGTAGGTCTCCAGG 214277 || ||||| ||| || | |||| | | || | ||| |||||||||| ||| Sbjct 3325337 AGGGTGGGCGAGGCGTG---CGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCGAGG 3325281 Query 214278 ACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGC 214337 || | |||| || |||||| | ||| | ||| | |||||||||||| Sbjct 3325280 ACCTTGTCAATGTTGTCACCGTGGATACCGATGGCGACACGCATAATCATGTGCTGGGGA 3325221 Query 214338 CTCTCTATGGGTCCTTTGGGGCCCT--TGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACC 214395 | ||| | | |||| | | | ||| ||||| |||||||| || |||||||| | Sbjct 3325220 CGCTC--GGCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGAGGGTCTTGAAGC 3325163 Query 214396 CAAAGTAG 214403 |||||||| Sbjct 3325162 CAAAGTAG 3325155 >seq5 Length=2378914 Score = 251 bits (278), Expect = 1e-61 Identities = 474/691 (69%), Gaps = 17/691 (2%) Strand=Plus/Minus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||| | ||| |||| || |||||| ||||||| ||| ||||||||||| Sbjct 2242703 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGC 2242644 Query 47920 TGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGA 47978 | || |||| | |||| ||| | | ||||| | || ||||| |||| | Sbjct 2242643 CGAGTCGTACAGCT-TGTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAA 2242585 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||| | ||||||| || ||||||||| ||||| |||||||| | || | |||| Sbjct 2242584 TGTACTGGCACATGAGCTTGGCGTTCATGCCAATGAGCGACACGGGGAGGGCGTCGGTGA 2242525 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGG 48098 | ||||||| ||| || ||||| || | | ||| || | | | || | | Sbjct 2242524 GGAACTCCTGCTCAATGGCGACGGCCTCGCGGATGATCCTGTTGATGGTG---TCCGGGT 2242468 Query 48099 GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGT 48158 | | ||| || | | || | || | |||||||||||| |||| | || |||| Sbjct 2242467 GGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGT 2242408 Query 48159 CCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCC 48218 | || ||||||| ||||||||||| |||||| ||||||| || | || ||||||| Sbjct 2242407 CACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCC 2242348 Query 48219 AGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGA 48278 |||| || | ||| || ||||| ||||||||||| ||||| || || || || ||| ||| Sbjct 2242347 AGAAGATGGACGCAAACGAGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGA 2242288 Query 48279 GCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | | ||| | || || | ||||||||| ||||||||| || |||||||| ||||||| Sbjct 2242287 GACGCTCGGCAAACGACGAGTTCTTGTCCGAGATCCAGTGGAGGGCCCAGTCGGCCTTCT 2242228 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 |||||||||| || || | || || || ||| || | |||| | |||| Sbjct 2242227 TCTTGATGCAGGGAATGTTGTCAATCGCGTTGAACAGGTAGTTGC---GGCGGGCGTTGT 2242171 Query 48399 CA---ACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAG 48452 || | ||||| |||| ||| | ||| |||| ||||| | ||||| || Sbjct 2242170 CACGGATGTAGGTGTCGATGAGGAGC---GAGTAGGTCTCGGAGTGAATGTTCTCCATCA 2242114 Query 48453 CGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCT 48512 ||||||||| ||||| |||| | ||||||| | ||| || || |||| | || Sbjct 2242113 TGATCTGGAAGCCGTAAAAGGTCTTGGCCTCGGCAATCTGGACCTCGCCACAGAAACGCT 2242054 Query 48513 CCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| ||||| ||||| || || || || Sbjct 2242053 CGACCAGGTTCTCGTTGACAATGCCGTCAGA 2242023 >seq3 Length=3276928 Score = 95.1 bits (104), Expect = 2e-14 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 48110 AGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATG 48169 ||||| ||| || |||| ||| |||||||| |||| || || || || |||| Sbjct 1613953 AGGTGGTTG---TATAGCAAGCACGCAAAGTCGGTGTGGGTACCCTCATCGCGCGAGATG 1613897 Query 48170 AGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCC 48229 ||| |||| ||||| | || |||||| || | | |||||||||||||| ||| Sbjct 1613896 AGCTCGTTTGAGAATGTCAATCCGCGCATGAGACCGCGTTTCTTGAGCCAGAAAATGGCC 1613837 Query 48230 GCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG 48289 || || ||||| ||||||||||||||||| || ||||| || |||| | | | || Sbjct 1613836 GCAAACGAGCCCGAGAAGAAGATGCCCTCGACACAAGCGAAAGCAATGAGGC-GTGTGCG 1613778 Query 48290 AAAGAAGCGT-TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATG 48346 ||| || | || | ||| || | | ||||||||||| ||||| ||| ||||| Sbjct 1613777 GAAG-GGCATGTCGGGCGTGATATACTTG--AGCGCCCAGTCCGCCTTTTTCCTGATG 1613723 >seq10 Length=834103 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| | |||||| ||||||| ||||||||||||||||| | ||| | Sbjct 603832 TCCCAGCGGTTGGCAGCGAAGAGGAGGTGGATGGCGTGGTCGTCCAGCTCGGACTTGGAC 603773 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGG 39073 | ||||||||| ||||||||| || |||| ||||| | ||| || Sbjct 603772 TGGAGGTACGAGTTGATCATCTGGCCAATGGAGGTGGTGCGGTCTGG 603726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532369166080