Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 316 4e-81 seq5 208 1e-48 seq3 100 5e-16 >seq2 Length=4282893 Score = 316 bits (350), Expect = 4e-81 Identities = 844/1275 (66%), Gaps = 41/1275 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 || |||||||||||||||||||| |||||| | |||||| ||| | || |||| || Sbjct 3326345 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTGAGGTTGAG-CTCACGAGCAGCGGGCGA 3326287 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||||| || || | ||| ||||||| || ||||| || || | ||||| Sbjct 3326286 GTCGAAGGGCAGGCGGAGAGCCATGAAGGCGTCGGCGAGACCCTGGACACCAAGACCGAC 3326227 Query 221539 GGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 ||| | ||| | | |||| || ||| | || |||| ||||| || |||| | Sbjct 3326226 GGGGCGGTGGCGCATGTTCGAGTTGCGAGC-CTCCTGG-ACGGGGTAGTAGTTCTTGGTA 3326169 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | | || ||||||| |||| ||| || | ||| ||||||| | | Sbjct 3326168 ATGACCTGGTCGAGGTTCTTGGTGACGACCTTGCAAATGTCGTGGAGCTTCTTAAAGTCG 3326109 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || ||| | || | | | || ||||| || ||||||| ||| Sbjct 3326108 TACG---ACTGGT-----TC-TCAATG---TCGACAAAGGCAGGGAGGGCAATCGAGGCA 3326061 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776 ||||| || ||||| |||||||| | |||| || ||||| || ||||||||| Sbjct 3326060 AGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAATCTCAGTGCAGAGGTTG 3326001 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 |||||||||| || ||||| | || || |||||| ||||| |||||||||||| Sbjct 3326000 GACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAG 3325941 Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG 221896 ||||| ||||| || |||||||| ||| ||| | || || | |||||| | |||| Sbjct 3325940 AGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAGAGCT-TCTG 3325882 Query 221897 GCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAG 221949 | || | ||| | |||| | |||| |||| | || || ||| Sbjct 3325881 GGCCTTGATGGTCTTGCGACCCTTGCCAGCACGCTCGTAGCTCTCGTA---------GAG 3325831 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | ||||||| || || | ||| | ||||| || ||| |||||| ||||| || Sbjct 3325830 GGTCTCAAACTCCTCCGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAG 3325771 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||||| || | | | ||| | || |||||||||||| |||||||| || || | Sbjct 3325770 GGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTA 3325711 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || || || | || || ||||||| ||||| ||| || | ||| || | || || Sbjct 3325710 GAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGTC 3325651 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | ||| |||||||| ||||| || |||| ||| | || ||||| |||||||| || Sbjct 3325650 AAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACC 3325591 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 |||||| || || | | || | | || ||| || | || || | ||||| Sbjct 3325590 ACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATGGGGACGATACCGTT 3325531 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT 222309 ||| ||||||||| || |||||||| || ||| | | ||| ||| | Sbjct 3325530 GGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTG-TGGATGTGGA 3325472 Query 222310 G-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 | |||||||| || || || |||||| ||||||| ||||||| ||||| ||| | Sbjct 3325471 GACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATAC 3325412 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || || ||||| ||||| | | | || || || ||||||||||| | | | || Sbjct 3325411 CGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGAGGGG 3325352 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 || |||||| || || ||||| |||||| |||||||| | | ||||| || | || Sbjct 3325351 TACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCCGACATGAGGTTGT 3325292 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | ||| || | |||||||| ||||| || |||||| | ||| || Sbjct 3325291 AGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGGCGACACGCATAATCA 3325232 Query 222549 TGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAG 222606 ||| |||||| | ||| | |||| | | | || ||| |||||||| || || Sbjct 3325231 TGTGCTGGGGACGCTCGGC--GACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGAG 3325174 Query 222607 AGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAG 222666 |||||||| |||||||||||| |||||| | | ||| | | ||| | ||| || Sbjct 3325173 GGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCACGGTCGTAGATAATGGCCGAGTCGAG 3325114 Query 222667 CTCCGACTTGTGCTT 222681 | ||||||||| Sbjct 3325113 AACATCCTTGTGCTT 3325099 >seq5 Length=2378914 Score = 208 bits (230), Expect = 1e-48 Identities = 457/688 (66%), Gaps = 13/688 (2%) Strand=Plus/Plus Query 25618 TCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTG 25677 ||||| || || || |||||||| ||| |||| | ||| | || || ||| | Sbjct 2242023 TCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCTGTGGCGAGGTCCAGATTGCC 2242082 Query 25678 GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737 ||||||||| || ||||| |||||||| || || || | ||||| ||| || Sbjct 2242083 GAGGCCAAGACCTTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTAC 2242142 Query 25738 GCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGT 25794 | ||| || || || ||||| ||| |||| | | ||||| Sbjct 2242143 TC---GCTCCTCATCGACACCTACATCCGTGACAACGCCCGCCGCAACTACCTGTTCAAC 2242199 Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 || || || |||| ||| ||||||||| |||||| |||||| | | |||||| Sbjct 2242200 GCGATTGACAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCG 2242259 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | ||| | | |||||| |||||| || | |||||||| || || ||||| ||||| Sbjct 2242260 GACAAGAACTCGTCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTC 2242319 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || ||||||||| ||||||||||||||||| || || ||||||||| || Sbjct 2242320 TTCTCGGGCTCGTTTGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTC 2242379 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||| ||||||||||||||| | |||||||||||||||| || ||||||||||| Sbjct 2242380 ACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTC 2242439 Query 26035 CTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAA 26094 || | ||| |||| | | | | || | || ||| || |||| |||||| Sbjct 2242440 CTGTTCAC---CCACCTCCGTCGCCGCCCCCACCCGGACACCATCAACAGGATCATCCGC 2242496 Query 26095 GAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGC 26154 ||||| || | || ||| ||||||| | | ||| Sbjct 2242497 GAGGCCGTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGC 2242556 Query 26155 ATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCC 26212 |||||| || |||||| |||| |||||||||| ||| ||||||| |||||| || ||| Sbjct 2242557 ATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCC 2242616 Query 26213 AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272 || || || || || ||| || | ||||| |||||||||||||| | || | Sbjct 2242617 --CTCGGCAACGACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCT 2242674 Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGA 26300 || || | || ||| |||||||||| || Sbjct 2242675 CGCTGCAGGGCAAGGCCAACTTCTTCGA 2242702 >seq3 Length=3276928 Score = 100 bits (110), Expect = 5e-16 Identities = 168/237 (71%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || ||| ||| ||||||||||| ||| || |||||||||||||| ||||||||| Sbjct 1613793 GCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATTTTCTGGCTC 1613852 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| | | | || | ||||| ||| || || || |||||||||||| | || || Sbjct 1613853 AAG-AAACGCGGTCTCATGCGCGGATTGACATTCTCAAACGAGCTCATCTCGCGCGATGA 1613911 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC-CACAAACCTT 26065 |||| ||||| || ||||| ||| |||| |||| |||| ||| | || || Sbjct 1613912 GGGTACCCACACCGACTTTGCGTGCTTGCTATACA---ACCAC---CTCACGCACCGCTG 1613965 Query 26066 CTC--AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 ||| | ||| || ||| || |||| ||||| |||| || ||||||||||| Sbjct 1613966 CTCCGAGGAGGAGGTTCACACAATTATCAGCGAGGCCGTGGCCATTGAGAAGGAGTT 1614022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844370409280