Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 172 7e-38 seq5 113 5e-20 seq3 87.8 2e-12 seq7 82.4 9e-11 >seq2 Length=4282893 Score = 172 bits (190), Expect = 7e-38 Identities = 414/622 (67%), Gaps = 17/622 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||||| ||||| |||||||| || ||||||| ||| Sbjct 3325222 CCCCAGCACATGATTATGCGTGTCGCCATCGGTATCCACGGTGACAACATTGACAAGGTC 3325281 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || ||||| | || || | ||||| | || ||||||||| Sbjct 3325282 CTCGAGACCTACAACCTCATGTCGGAGCGTTACTTTACGCACGCCTCGCCCACCCTCTTC 3325341 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||| || || |||||||| ||||||||| |||||| ||||| ||| Sbjct 3325342 AACGCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGACGAC 3325401 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || |||||||||| | || || | | || || || ||||| ||| ||||| Sbjct 3325402 TCCATTGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGC 3325461 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 75509 ||||| || | |||||||| | | | |||| | ||||| ||| || || | Sbjct 3325462 GGTATCGGTCTCCACATCCACAACATTCGCGCCA--AGGGCTCGTACATTGCCGGTACCA 3325519 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| | || | ||||| | || ||||| |||| | | ||||| || ||||| | Sbjct 3325520 ACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCCACCGCTCGCTACG 3325579 Query 75570 TAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 | | || ||| || |||| || || | || ||||| | || || |||| Sbjct 3325580 TCGACCA---GGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGC 3325636 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | || || || | || |||||||| | || ||||| || | || |||| ||| Sbjct 3325637 ACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTG 3325696 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | || || || | |||| ||||| || ||||| ||||||||||| || |||| | Sbjct 3325697 CCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCG 3325756 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGG 75801 ||| | ||| | || | || || | | || || || ||| |||||| | | | Sbjct 3325757 ACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTCCACTCG- 3325815 Query 75802 TGAGGAGTTTGAAGCCCTCTAC 75823 ||||||||||| |||||||| Sbjct 3325816 -GAGGAGTTTGAGACCCTCTAC 3325836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 281/429 (66%), Gaps = 10/429 (2%) Strand=Plus/Minus Query 14360 GCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAG---AAT 14416 || || |||||||||||| ||| | || || | | ||| ||||| |||| || Sbjct 1615963 GCCGACGGTCTCAAGCCTGGTCAGCGCAAGGTTCTTTTTGCGTGCTT---TAAGCGTAAC 1615907 Query 14417 CTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTAC 14476 |||||| | || || ||||| || || || | | ||||| | || || |||| ||| Sbjct 1615906 CTCAAGAAGGAGATCAAGGTCGCTCAGCTTGGAGGTTATGTTTCCGAAAACACTGCATAC 1615847 Query 14477 CACCATGGTGAA--GTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGG 14534 ||||| |||||| || || | ||| ||||| | || | | | | Sbjct 1615846 CACCACGGTGAACAGTCTCTGTTCATGACC--ATTGTCGGTCTTGCGCAGAAGTTTGTCG 1615789 Query 14535 GTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTG 14594 || |||||| ||||||| || || || || || || ||||||||| | ||||| Sbjct 1615788 GTAGCAACAACGTTAACCTGCTCGACCCCAACGGACAGTTCGGTACGCGTATTCAGGGTG 1615729 Query 14595 GTAAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGA 14654 ||||||||||| | | | ||||| | ||| || || || | | | || || Sbjct 1615728 GTAAGGATGCTGCGAGCGCTCGTTACATCTACACCAACATTCCCCGCATGACCCACACGA 1615669 Query 14655 TCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTG 14714 ||||| | || || | || | ||||||||| | | |||||||| | ||| | Sbjct 1615668 TCTTTCACTCTGCCGACAATGCGCTTCTCAACTACCTTGTTGATGATGGCCAGAGCATCG 1615609 Query 14715 AACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCG 14774 | || || || ||| |||| || | || ||||| ||||| ||||| |||| ||||||| Sbjct 1615608 AGCCTGAATTCTACCTGCCCACCGTCCCCATGGTGCTCGTCAATGGTGCCGACGGTATCG 1615549 Query 14775 GTACGGGTT 14783 |||| |||| Sbjct 1615548 GTACCGGTT 1615540 >seq5 Length=2378914 Score = 113 bits (124), Expect = 5e-20 Identities = 263/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||||| | ||||| | | ||| | | |||| |||| || || |||||| Sbjct 2242225 AGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCGGACAAGAACTCG-TCGTTTGCCGAG 2242283 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTAT 65138 || || | || ||||| || ||||||||||||||||| || || || |||| | || Sbjct 2242284 CGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCGTT-TGCGTCCAT 2242342 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | ||| | |||||||| ||||||||||| || || |||||| || || || || || Sbjct 2242343 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTC 2242402 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAG 65258 || || |||||||||||| || |||||| || |||| | ||| | Sbjct 2242403 GCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTTCACCCACCTCCGTCGCCG 2242462 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | || || ||| || ||| | ||||| || | |||||| | | ||| Sbjct 2242463 CCCCCACCCGGACACCATCAACAGGATCATCCGCGAGGCCGTCGCCATTGAGCAGGAGTT 2242522 Query 65319 CATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377 | || ||||| || ||| ||| ||||| || |||||| | || |||| | ||| Sbjct 2242523 CCTCACCGACGCCCTCCCCGTGT-CGCTCATTGGCATGAACGCCAAGCTCATGTGCCAGT 2242581 Query 65378 ACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||||||||| ||| | || ||||| ||| Sbjct 2242582 ACATTGAGTTTGTCGCCGACCGTCTGCTC 2242610 >seq3 Length=3276928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTAT 65138 ||||| |||| || || ||||| ||||| ||||||||||| || || || ||| || || Sbjct 1613784 CGCCTCATTGCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCAT 1613842 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 || ||| | ||||| || |||||||||| || | |||||||| || || || || Sbjct 1613843 TTTCTGGCTCAAGAAACGCGGTCTCATGCGCGGATTGACATTCTCAAACGAGCTCATCTC 1613902 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||||||| |||| || ||||| Sbjct 1613903 GCGCGATGAGGGTACCCACACCGACTTTGC 1613932 >seq7 Length=1599831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 219/330 (66%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 175183 CGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGAT 175242 |||||| | || || | || || |||| ||||| || || || ||| |||| | Sbjct 730911 CGCTTCCGCGACGTGGCCGGTATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAAG 730970 Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCC 175300 || |||||| | ||| ||| || |||| ||||||||||| ||||| || ||| Sbjct 730971 TTCCTCAAGGAGCCCCAGAAGTACGA--GAAGCTCGGTGCCAAGATTCCCCGTGGTGCCA 731028 Query 175301 TTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAAT 175360 | || |||| || ||||| || ||||| || || ||| |||| || ||||| Sbjct 731029 TCCTTTCGGGCCCTCCCGGTACCGGTAAGACTCTGCTTGCCAAGGCCACTGCCGGTGAGG 731088 Query 175361 CAAATGT-CCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | || || ||| | | | | ||| || | | | || || ||||||||||| ||||| Sbjct 731089 CCAAGGTGCCCTTCCTTTCGGTG-TCGGGTTCCGAGTTCGTCGAGATGTTTGTCGGTGTC 731147 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 |||||| | || ||||| || || | | || | | ||| || || || || Sbjct 731148 GGTGCCTCGCGTGTGCGCGACCTGTTCGCGACAGCAAGGAAGAATGCCCCCTGCATCATC 731207 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAG 175509 || || || |||||||| ||||| || ||| Sbjct 731208 TTTATCGACGAGATTGACGCGGTCGGAAAG 731237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569324086560