Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3 383 2e-101 seq2 178 2e-39 seq5 159 5e-34 seq7 91.5 2e-13 >seq3 Length=3276928 Score = 383 bits (424), Expect = 2e-101 Identities = 967/1464 (66%), Gaps = 11/1464 (1%) Strand=Plus/Plus Query 195317 GGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAAT 195376 || ||||| ||||| ||||| | || ||||| ||||| || || ||||| ||| | || Sbjct 391871 GGTACTACCTACTCCTGTGTCGCCGTCTGGCAGAATGACCGCGTTGAGATCATCGCCAAC 391930 Query 195377 GACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTT 195436 ||||| || ||||| || || || || ||||| || || || || || |||||| | Sbjct 391931 GACCAGGGTAACCGCACCACCCCCTCCTACGTCGCTTTCACCGACTCGGAGCGTCTCATC 391990 Query 195437 GGAGATGCCGCAAAAAATCAGACAGCTATGAA-CCCTATCAATACTGTCTTTGACGCGAA 195495 || || ||||| || || ||| |||||||| |||||| || || ||||| |||||||| Sbjct 391991 GGTGACGCCGCCAAGAACCAGGTCGCTATGAATCCCTAT-AACACCGTCTTCGACGCGAA 392049 Query 195496 GCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTC 195555 ||| || || ||||||||||| | || | ||||| || ||| ||||| | Sbjct 392050 GCGCCTCATCGGTCGCAAGTTCGCAGACGCTGAGGTCCAGTCTGACTGCAAGCACTGGCC 392109 Query 195556 TTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGA 195615 | | || || | ||| ||||| || | || || | | ||| || Sbjct 392110 CTTCAAGGTCATTGACAA---GGCAACCAAGCCGTACATCCAGGTGGAGTACCGCGGCGA 392166 Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 || || | || | ||||| || ||||| |||||||| |||| |||||| ||| Sbjct 392167 GACCAAGGAGTTCTCCCCCGAGGAGATTTCTTCTATGGTCCTGATCAAGATGCGTGAGGT 392226 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 ||| || | | | | ||| || || | || || || ||||| ||||| ||||| Sbjct 392227 TGCTGAGGCCTACCTCGGTGGCACCGTCTCCAAGGCCGTCGTCACTGTCCCTGCCTACTT 392286 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 || || || || || ||||| || |||||||||| | || || || || || || Sbjct 392287 CAACGACTCGCAGCGTCAGGCTACCAAGGACGCTGGCACCATCGCCGGCCTCGACGTCCT 392346 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGA 195855 | || ||||| || || || || || || || || || || || |||||||| | || Sbjct 392347 CCGTATCATCAACGAGCCTACCGCCGCCGCTATCGCCTACGGCCTCGACAAGAAGAGCGA 392406 Query 195856 CGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCT 195915 | || || || || | |||||||| |||||||||||||| || || || || || || Sbjct 392407 GGGTGAGAAGAACGTCCTCATCTTTGACCTCGGTGGTGGTACCTTCGACGTGTCTCTCCT 392466 Query 195916 CAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGG 195975 || || || | || || ||||| || ||||| ||||||||||| || || || ||||| Sbjct 392467 CACCATCGAGGAGGGCATCTTCGAGGTCAAGGCCACTGCTGGTGACACCCACCTCGGTGG 392526 Query 195976 TGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAA 196035 || || || || || || || ||||| | | || ||| | ||||| || Sbjct 392527 CGAGGACTTTGACAACCGCCTGGTCAACCATTTCGTTCAGGAATTCAAGAGGAAGAACAA 392586 Query 196036 GAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGC 196095 ||| || | || || | | || || ||||| || | || || || || ||||| Sbjct 392587 GAAGGACCTCTCGTCCAACGCCCGTGCCCTCCGTCGTCTCCGCACCGCTTGCGAGCGTGC 392646 Query 196096 CAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGG 196155 ||| || |||||||| ||| | ||||| || | ||||| || ||| | |||||||| Sbjct 392647 CAAGCGCACTCTCTCGTCTGCTGCTCAGACCTCCATCGAGATCGACTCGCTCTTTGACGG 392706 Query 196156 AATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT 196215 ||||||||||| || | || |||||||| || || || ||| | | || | || Sbjct 392707 CATTGACTTCTACACCTCGATCACCCGTGCCCGCTTCGAGGAGCTCTGCCAGGACCTCTT 392766 Query 196216 TAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAA 196275 | | ||||| || || || | || || |||||| | ||||| || ||||| | Sbjct 392767 CCGTTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGTGACTCGAAGATTGACAAGTCCAG 392826 Query 196276 GGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCT 196335 || | || |||||||| || || || || || ||||| || ||||| |||| ||| Sbjct 392827 CGTCAACGAGATTGTCCTCGTCGGCGGCTCTACTCGTATCCCCAAGAT---CCAGAAGCT 392883 Query 196336 T-TCTAG--CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGT 196392 | ||| | | | |||| || ||| |||||||||| || || || || Sbjct 392884 TGTCTCGGACATGTTCAGCGGCCGCGAGCCCAACCGCTCGATCAACCCCGACGAGGCCGT 392943 Query 196393 TGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCA 196452 || || ||||| ||||| ||||| |||| ||| |||| | | | || Sbjct 392944 CGCCTACGGTGCCGCCGTCCAGGCCTCTATCCTCAACGGTGAGACCTCGGAGGCCACTCA 393003 Query 196453 AGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGT 196512 || || || || || || ||||| || | || ||||| | || || || || || | Sbjct 393004 GGACCTCCTCCTCCTCGACGTTGCCCCTCTCTCGATGGGTATCGAGACCGCTGGCGGCAT 393063 Query 196513 TATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTC 196572 ||||| | || | | ||||| || |||| || |||||| | ||||| || Sbjct 393064 CATGACCCCCCTCATCAAGCGCAACACCACCGTTCCCACCAAGAAGAGCGAGGTCTTCTC 393123 Query 196573 AACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCG 196632 || || ||||| || || || ||||| | ||| || || || || || || || || Sbjct 393124 CACCTACTCCGACAACCAGCCCGGTGTCCTTATCCAGGTTTACGAGGGCGAGCGTGCCAA 393183 Query 196633 TGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAG 196692 | ||||| | | || || || | ||||| | |||| || || |||| ||| | Sbjct 393184 GACCAAGGACTGCAACCTCCTCGGCAAGTTCGAGCTTTCGGGCATCCCCCCTGCCCCCCG 393243 Query 196693 AGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCAC 196752 ||||| || ||||| | |||| ||||| | ||||| || ||||| || |||||| | Sbjct 393244 CGGTGTCCCCCAGATCGAGGTTTCGTTCGACGTTGACGCCAACGGAATCCTCAACGTCTC 393303 Query 196753 AGCTGAGGACAAGGCTTCTGGCAA 196776 ||| |||||| | | ||||| Sbjct 393304 CGCTTCCGACAAGACGACCGGCAA 393327 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| || || || |||||||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 2414299 CCTTACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTCAA 2414358 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 ||||||| || || ||||| ||||| || || || ||||| || || || || || || Sbjct 2414359 GTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGG 2414418 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || ||||| || || || || ||||| | || |||||| | || |||||||| || || Sbjct 2414419 CAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 2414478 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || || | || || |||||| Sbjct 2414479 CCACCTCGTCCTCCGCCTGCGTGGTGGT 2414506 >seq2 Length=4282893 Score = 178 bits (196), Expect = 2e-39 Identities = 463/701 (66%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 ||| || || ||||||| || || || || | || || |||||||| | ||| ||||| Sbjct 1530765 TGTCCCCGCCTACTTCAACGACTCGCAGCGTCTTGCCACCAAGGACGCCGGTGCCATTGC 1530824 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || || ||| | || ||||| || || || || || || ||||| || || || Sbjct 1530825 TGGCCTTGACGTTCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATTGCCTACGGCCT 1530884 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||| |||| | | || || || || || | ||||| || |||||||||||||| || Sbjct 1530885 CGACCAGAAGTCGAAGGAGGAGAAGAACGTCCTCATCTTCGACCTCGGTGGTGGTACCTT 1530944 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||||| || || ||| || |||||| | |||| || ||||| || |||||||| Sbjct 1530945 CGATGTTTCGCTCCTCTCGATCACTGGTGGTGTCTTCGCCGTCAAGGCCACCGCTGGTGA 1531004 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA-TGCACGTCTTCTCCGTCATTTGTCTGATGAGT 196019 || || || |||||||| || ||||| ||| || || || || | |||| Sbjct 1531005 CACCCACCTTGGTGGTGAGGACTTCGACAACAC-CCTCCTTGAGCACTTCAAGGCCGAGT 1531063 Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079 || || ||||| ||| || || || | | || | ||||| ||||| || | Sbjct 1531064 TCAAGCGCAAGAACAAGCTTGACATCTCGGACGACCCCCGTGCTCTCCGTCGTCTCCGTT 1531123 Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTG 196139 | || ||||| |||||||| || || ||||| || | || || | || ||| | | Sbjct 1531124 CGGCCTGTGAGCGTGCCAAGCGCACCCTCTCGTCGGTCACCCAGACCACTGTCGAGGTCG 1531183 Query 196140 ATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGT 196199 | ||| | | | || | |||||||| | | || |||||||| ||||| || ||| Sbjct 1531184 ACTCGCTCTACCAGGGCACTGACTTCTCGTCGAACATCACCCGTGCTCGTTTCGAGGAGA 1531243 Query 196200 TAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAA 196259 | ||| | | || | | | || || || ||||| | || || ||||| | Sbjct 1531244 TCAACGCCGTCGCTTTCAAGTCGACCATCGAGCCCGTTGAGAAGGTCCTCAAGGACGCCA 1531303 Query 196260 AGATGGATAAGT-CTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCG 196318 || | || | | |||||||| || |||||||| || || || || |||||||| || Sbjct 1531304 AG-TCGACCCCTGCCAAGGTTGACGACATTGTCCTCGTTGGTGGCTCTACCCGTATCCCC 1531362 Query 196319 AAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAAC 196378 ||||| || | | | || | |||| | | | ||||| |||||||| Sbjct 1531363 AAGATCCAGTCGCTCGTCTCCGAGTACTTCGGTGGCCGCCAGCTGAACAAGTCGATCAAC 1531422 Query 196379 CCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGC 196419 || || || || || ||||| ||||| ||||| |||| ||| Sbjct 1531423 CCTGACGAGGCTGTCGCTTACGGTGCCGCCGTCCAGGGTGC 1531463 Score = 156 bits (172), Expect = 6e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| ||||| || || || || || || || || |||||||||||||| ||||| Sbjct 1079057 AGAATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 1078998 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| ||||| ||| |||| | ||||| || || ||||| ||||| || || || Sbjct 1078997 TCGGACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 1078938 Query 171979 CAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTAC 172038 ||||| || || || || || || || ||||| || || || || ||||| | || ||| Sbjct 1078937 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 1078878 Query 172039 AACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||| | || |||||||| || || ||||| || || | || || |||||| Sbjct 1078877 AACATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGCCTCCGTGGTGGT 1078827 >seq5 Length=2378914 Score = 159 bits (176), Expect = 5e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || || |||||||||||||| |||||||| ||||| || || ||| |||| Sbjct 2288456 CCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATTGACAACGTCAA 2288515 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||| || || ||||| || ||||| ||||| ||||| || || ||||| || || Sbjct 2288516 GAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGG 2288575 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || ||||| || || || || ||||| | || |||||| | || |||||||| ||||| Sbjct 2288576 CAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCT 2288635 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||||||| || | || || |||||| Sbjct 2288636 CCACCTTGTCCTTCGTCTCCGCGGTGGT 2288663 Score = 116 bits (128), Expect = 5e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || || || |||||||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 2288123 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACTATCGACAACGTCAAG 2288182 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 | ||||| || || ||||| ||||| || ||||| ||||| || || || || || || Sbjct 2288183 TCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 2288242 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 || ||||| || || || |||||||| | || |||| Sbjct 2288243 AAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACA 2288279 >seq7 Length=1599831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 320/491 (65%), Gaps = 19/491 (4%) Strand=Plus/Plus Query 198465 GGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAA 198524 ||||| ||| || ||||| ||| | |||| |||| | || || || | ||| | Sbjct 730929 GGTATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAAGTTCCTCAAGGAGCCCCAG 730988 Query 198525 AAGTACTATGGAAGT--GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGG 198582 |||||| | |||| |||||| || || |||||||| | || | || | || | Sbjct 730989 AAGTACGA--GAAGCTCGGTGCCAAGATTCCCCGTGGTGCCATCCTTTCGGGCCCTCCCG 731046 Query 198583 GTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCTT- 198641 |||| ||||| || || || || || | || ||||| | | || ||||| ||| Sbjct 731047 GTACCGGTAAGACTCTGCTTGCCAAGGCCACTGCCGGTGAGGCCAAGGTGCCCTTCCTTT 731106 Query 198642 CAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGG 198701 | ||| | |||||| | |||||||||| || ||||| ||||| ||| || || Sbjct 731107 CGGTGTCGGGTTCCGAGTT-CGTCGAGATGTTTGTCGGTGTCGGTGCCTCGCGTGTGCGC 731165 Query 198702 GAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGAC 198761 || || || | | |||| | | ||| || || |||||||| || || ||||||||| Sbjct 731166 GACCTGTTCGCGACAGCAAGGAAGAATGCCCCCTGCATCATCTTTATCGACGAGATTGAC 731225 Query 198762 GCTGTTGGTAAGAAGCGTGGTGGAACTAC-TACACCT----GGTAATGATGAGCGTGAGC 198816 || || || ||| |||||| || | ||| | || || || ||||||||| Sbjct 731226 GCGGTCGGAAAGGCCCGTGGT--AAGGGCGGACAGTTTGGCGGCAACGACGAGCGTGAGA 731283 Query 198817 AGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT---TGACAATGAGACTGGTATCG 198873 ||| | |||||| | || |||||||| || || | ||| ||| ||| | Sbjct 731284 CGACCCTCAACCAGATCCTGGTCGAGATGGACGGCTTCTCTACCAAGGAG---CATATTG 731340 Query 198874 TGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTC 198933 | || | || | ||| || | ||| | || || | ||| || | |||||||| | Sbjct 731341 TCGTTCTCGCCGGTACCAACCGTCCCGATGTTCTCGACGCTGCCCTCATGCGTCCCGGCC 731400 Query 198934 GATTCGACCGT 198944 | ||||||||| Sbjct 731401 GTTTCGACCGT 731411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862095738640