Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 120 9e-22 seq3 109 2e-18 >seq2 Length=4282893 Score = 120 bits (132), Expect = 9e-22 Identities = 195/277 (70%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||| ||||| ||||| | || |||||||| |||||||| | || || ||||| Sbjct 407304 GTCCTCCATGGCCTTGACCAGTCGTCGCTGAATGTAACCAGTCTCGGCGGTCTTGACAGC 407245 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-A 302689 ||||| || ||||| ||||||||||||| || |||||||| | ||| | || ||| | Sbjct 407244 GGTATCGATAAGACCCTCACGACCACCCATGGCGTGGAAGAAGAACTCCT-GGGGCGTGA 407186 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | | | ||| | || ||||||||||||| |||||| || |||| ||||| Sbjct 407185 GACCACGCAGGTACGAGTTTTCGACGAAACCACGCGACTCGGGTCCATAGTCGTCCTTGG 407126 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 ||||| || || || | || | ||| | || ||||||||||| || || ||| Sbjct 407125 AGAAGTGGGGGAGCGTGCGGTGACGGAAACCGAAGGGAATACGCTTTCCTTCCACAATCT 407066 Query 302810 GCTGTCCCAGGCA---CGAAATCATCTGCGAAATATT 302843 ||||||| | || ||| ||| |||||||| || Sbjct 407065 GCTGTCCGACACAACCCGA---CATTTGCGAAATGTT 407032 >seq3 Length=3276928 Score = 109 bits (120), Expect = 2e-18 Identities = 180/258 (70%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||||| | ||||| || | || | | || || || | || || | Sbjct 2384558 GCCATGAGACCACACTGGTCGCACACGTGCAGGCGGAACGCGTCCGACGACTCGTACATG 2384617 Query 251464 CGACCCTTGGTGAAGC--GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 || ||||| ||| | | ||| |||||| || ||||| || || ||||||||||||| Sbjct 2384618 CGCTCCTTGAGGAAACCGGCGAT--ACCGTGCGAGATCATGCAGTCGCGCTCCATTTCAC 2384675 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA 251581 ||||||| |||||||| || || | | ||||||| | ||||| || ||||| | || Sbjct 2384676 CGAAACGCAGACCACCGTCACGCGAACGACCCTCGACGGGCTGGCGCGTGAGGATCTGCA 2384735 Query 251582 TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 || || || || || ||| || | ||||| |||||||||||||||||| Sbjct 2384736 GCGGGCCACGGGCACGCGCGTGGATCTTGTCGTCGACCATGTGCTTGAGACGCTGGTAGT 2384795 Query 251642 ATGCGGGACCGATGAAGA 251659 | | |||||| | | ||| Sbjct 2384796 ACGTGGGACCAAAGTAGA 2384813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816902266469