Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq2 93.3 4e-14 >seq5 Length=2378914 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || ||||| ||||| || || | || Sbjct 2288892 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 2288951 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||| || Sbjct 2288952 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 2289011 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | ||||| || ||| Sbjct 2289012 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCAGACTACAAC 2289071 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| |||| | || |||| || ||| Sbjct 2289072 ATTCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTGCGTGGCGGC 2289119 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || |||||||| || || || | | Sbjct 2288664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCT 2288723 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 2288724 GACACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 2288783 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||| ||||| | | | || || || ||| Sbjct 2288784 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAAC 2288843 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| ||||| || ||| Sbjct 2288844 ATCCAGAAGGAGTCGACCCTGCAC 2288867 >seq2 Length=4282893 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || ||||| || || || | Sbjct 1079054 ATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 1078995 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1078994 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1078935 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 1078934 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 1078875 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| ||||| || ||| Sbjct 1078874 ATCCAGAAGGAGTCGACCCTCCAC 1078851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897391922360