Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5 104 5e-17 >seq5 Length=2378914 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || || Sbjct 2289118 CCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAG 2289059 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| || | || || || ||||| Sbjct 2289058 AGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 2288999 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || ||||| || || | || || Sbjct 2288998 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACC 2288939 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| ||||| ||||| || || |||||||| Sbjct 2288938 TCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826734552543