Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq8 129 7e-25 >seq8 Length=1346441 Score = 129 bits (142), Expect = 7e-25 Identities = 216/307 (70%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 147198 GGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTA 147257 ||||| ||||||||| || || ||| | | |||||||||||||||| ||| || Sbjct 730426 GGGGTCATTCTTAATCTTGTCAATGACCTCCATGAGCTGGTCCACGCCCTTGCCGGAATA 730367 Query 147258 GTTTGTCC-CGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTG 147316 || |||| ||||| | || ||| ||||||||||||||||||||||| ||||| | Sbjct 730366 GTC-GTCCTCGCAGGTACCATAGTCGGCGCCAAAGTGCCTCCACTGGAAGCCATACACGG 730308 Query 147317 GCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCG-CCCGCTTGAGAAACTCGGGGGAC 147375 | ||||||||||| | | | ||| ||| ||| | || | ||| |||| | Sbjct 730307 GTCCCAGGTCGCCTTCCCTCCGGTG-ACCAAGACCGACGCGGTCGAGGTACTCCCTGCTG 730249 Query 147376 CCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| | || |||||||| | |||||| ||| |||| ||| ||| ||| ||||| Sbjct 730248 CCGTTGCCGGCCCAGATGTTGATGCCCTTGTCGGCGAGCACCTGGCCGTCGGTGCAGCCC 730189 Query 147436 CGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGC 147495 || |||||||| |||||||| | || || | || || | ||||||||| ||| Sbjct 730188 GAGACAAACCAGAGGAGCTCCTCAATCACGCCGCGGGTGAACACGCGCTTGGTGGTGAGC 730129 Query 147496 AGGGGGA 147502 | ||||| Sbjct 730128 AAGGGGA 730122 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 |||||||| |||| ||| ||||||||||| |||| | | | || || || | Sbjct 730830 GGCTCCACATGGTCCCTGTAAACGTGCGCGTCGCCCATCTGGAGGATGAACTCGTGCGCC 730771 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 | |||||| || ||||| | ||||| |||||| |||| ||| ||||| |||||||| Sbjct 730770 TCGGTGCCGGTTACCTGGGCGATCATGTGGGTGAGGAGCGCGTAACTGGCAATGTTGAAA 730711 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT 147094 ||||| || || |||| ||| | |||| |||||||| |||| ||||||| Sbjct 730710 GGGACACCGAGACCCAAGTCGCATGACCGCTGGTACATGAGGCAGGAGAGCT 730659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487730136800