Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 190 3e-42 seq2 185 1e-40 seq4 113 6e-19 >seq5 Length=2378914 Score = 190 bits (210), Expect = 3e-42 Identities = 269/363 (74%), Gaps = 19/363 (5%) Strand=Plus/Plus Query 1455922 GATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTT-TATGAAAGAGGTCCA-ATTGCCAG 1455979 || ||||| || ||||||||||| || || || | || |||||||| |||||| | Sbjct 2242026 GACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCTGTGGC-GAGGTCCAGATTGCC-G 2242083 Query 1455980 AGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACT 1456039 |||| |||||||| ||||||||| || || ||||| ||||| || ||||||| Sbjct 2242084 AGGCCAAGACCTTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTACT 2242143 Query 1456040 CGCTCCTGATCGACACCTACGTCAAGGACC-CGGTCGA-GAAGGACCACCTCTTTCGCGC 1456097 ||||||| |||||||||||| || ||| || || | | || |||| || ||| Sbjct 2242144 CGCTCCTCATCGACACCTACATCCGTGACAACGCCCGCCGCA--ACTACCTGTTCAACGC 2242201 Query 1456098 CATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA---A 1456154 || |||| | || | | | ||| |||||||||||||| | | |||||| | Sbjct 2242202 GATTGACAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCGGA 2242261 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 |||| | |||| | ||||||||||| ||| ||| ||||||||| |||||||| ||| Sbjct 2242262 CAAGAA----CTCGTCG-TTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATC 2242316 Query 1456214 TTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || ||||||||| || |||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 2242317 TTCTTCTCGGGCTCGTT-TGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGG 2242375 Query 1456273 TCT 1456275 ||| Sbjct 2242376 TCT 2242378 Score = 181 bits (200), Expect = 2e-39 Identities = 197/256 (77%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1456522 GATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGC 1456581 ||||||| ||||||||||| || ||| | ||||| ||| ||| | || || ||| | Sbjct 2242487 GATCATCCGCGAGGCCGTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTC 2242546 Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 |||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct 2242547 GCTCATTGGCATGAACGCCA-AGCTCATGTGCCAGTACATTG-AGTTTGTCGCCGACCGT 2242604 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 ||||||| || |||||| | || |||| ||| |||||||||| ||| | || Sbjct 2242605 CTGCTCGTCGCCCTCGGCAAC-GACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTAT 2242663 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC---GAGTAC 1456758 |||| |||||||||| |||||||| ||||||| ||||| | |||||| | | ||| Sbjct 2242664 GGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA--GTCGCGTGTCTCGGCCTAC 2242721 Query 1456759 GCCAAGGCCGGCGTCA 1456774 ||||| | || |||| Sbjct 2242722 TCCAAGTCGGGTGTCA 2242737 Score = 98.7 bits (108), Expect = 1e-14 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||| |||| || || ||||||||||||||| || ||| Sbjct 2241825 GATCTGGCAGATGTAC-AAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATCAACC 2241883 Query 1455835 TCGGCGCCGACACGGTCCACTGGG---TGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| |||||| | | |||||| ||| | |||| |||||||| | || ||| Sbjct 2241884 TCGCTGCCGACCTGCACGACTGGGACAACAAGCTCAACGACAACGAGCGCTACTTTATCG 2241943 Query 1455892 AGCACGTCCTCGCCtttttt 1455911 |||||||||||||||| ||| Sbjct 2241944 AGCACGTCCTCGCCTTCTTT 2241963 >seq2 Length=4282893 Score = 185 bits (204), Expect = 1e-40 Identities = 345/505 (68%), Gaps = 19/505 (4%) Strand=Plus/Plus Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739 |||||||||| || |||||| | ||||| | ||| ||| |||||| ||| |||| Sbjct 3325100 AGCACAAGGATGTTCTCGACTCGGCCATTATCTACGACCGTGACTTTTCGTACAACTACT 3325159 Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799 |||| | |||| | || || ||||| | | || | |||| ||||| Sbjct 3325160 TTGGCTTCAAGACCCTCGAGCGCTCGTACCTCCTCCGCATCGACGGCAAGGTCGCCGAGC 3325219 Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859 | |||||| | ||| | |||||||||||| | || ||| | ||| |||| Sbjct 3325220 GTCCCCAGCACATGATTATGCGTGTCGCCATCGG----TAT--------CCACGGTGACA 3325267 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAG 259919 | | || | || |||| |||||| | ||||||| ||| | || || | Sbjct 3325268 ACA---TTGACAAGGTCCTCGAGACCTACAACCTCATGTCGGAGCGTTACTTTACGCACG 3325324 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | ||||||| ||||| || ||||| || || | ||| |||| ||||||||||| || Sbjct 3325325 CCTCGCCCACCCTCTTCAACGCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTG 3325384 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | | |||||||| ||| || || || || ||||| ||||| |||||| ||||| | | Sbjct 3325385 TCGCCATGAAGGACGACTCCATTGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGA 3325444 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGC 260097 |||||||| | || ||||| |||||| | || || ||||| | |||||| |||| | Sbjct 3325445 TCTCCAAGACTGCTGGCGGTATCGGTCT--CCACATCCACAACATTCGCGCCAAGGGCTC 3325502 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 ||| | || || |||||||| | |||||||| | || |||||||| |||| | | Sbjct 3325503 GTACATTGCCGGTACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGA 3325562 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | ||| || ||||||||||||||| Sbjct 3325563 TGCCACCGCTCGCTACGTCGACCAG 3325587 Score = 132 bits (146), Expect = 7e-25 Identities = 181/251 (72%), Gaps = 14/251 (6%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | ||||||||||| ||||||||||| |||||| || | | | Sbjct 2147011 TCGTACTCGTCGTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----A 2146957 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||| | ||| | |||||||| || |||||| |||| ||||| Sbjct 2146956 TC-TCGAACAAGGCCATGGCCATCCTCAACTCGTTCGTTGCCGACATCTTCGAGCGCATT 2146898 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCC----AACAAGCGCAACACGATCGGCACGCG 725071 | |||||||||| || || |||| | ||| | ||| || ||| |||| Sbjct 2146897 GCCACCGAGGCCT----CCAAGCTCGCTTCGTACAACCACCGCTCGACCATCTCGTCGCG 2146842 Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 ||||||||||||||||| || || ||| | | ||| || || | | |||||| |||| Sbjct 2146841 TGAGATCCAGACCGCCGTCCGTCTCATCCTCCCCGGAGAGCTCTCGAAGCACGCTATCTC 2146782 Query 725132 CGAGGGCACCA 725142 |||||||||| Sbjct 2146781 GGAGGGCACCA 2146771 Score = 120 bits (132), Expect = 4e-21 Identities = 173/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 ||| || ||||| ||| |||||| || |||||||| | || || || | ||||| Sbjct 3326748 CGAGCTGAAGGCCATCTACAAGACTGTCTGGGAGGTTTCGCAGAAGGCTGTC-ATTGACC 3326806 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 | || |||||||| | | | |||||||| |||||||||||| | |||| || Sbjct 3326807 TCGCCGCCGACCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCCA 3326866 Query 263291 ACCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAG 263349 |||| || | | ||| |||| ||||||||| ||| | ||| ||||| |||||| Sbjct 3326867 ACCCCTCGTTCTCGCAGC-TCACCTCGATGCACTTCTACGGCTGGAAGCGCGGTCTCAAG 3326925 Query 263350 ACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||||| ||||| || |||||||| || |||||||||||||| || |||||| |||| Sbjct 3326926 ACTGGTGCCTACTACCTCCGCACCCGTCCTGCTGCCAACGCCATCCAGTTCACCATCGA 3326984 Score = 114 bits (126), Expect = 2e-19 Identities = 309/474 (65%), Gaps = 12/474 (3%) Strand=Plus/Plus Query 261796 CAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTCATCAACTG 261855 ||||||| || ||||||||| |||||| || || |||||||| ||| || | ||| Sbjct 3325596 CAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCGGACGTCTTTGACTT 3325655 Query 261856 GCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGCGATCTCTT 261915 || ||||| |||||||||||||||| |||| || || || | | || || Sbjct 3325656 CCTTGACCTGCGCAAGAACCACGGCAAGGA----GGAGGTTCGTGCCCGTG--ACCTGTT 3325709 Query 261916 TTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGCGACTGGTC 261975 |||| ||| |||| |||||| || ||| || | | | ||| | | |||||| | Sbjct 3325710 CTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCGACGGTGACTGGAC 3325769 Query 261976 GCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCCTTTGACGC 262035 ||| | ||||| ||||| |||||||| ||| | | | || ||||| | Sbjct 3325770 CCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTCCACTCGGAGGAGTTTGAGAC 3325829 Query 262036 CCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTCGTGCCCGCACGACA 262092 |||||| ||| || |||| || | || || || | Sbjct 3325830 CCTCTACGAGAGCTACGAGCGTGCTGGCAAGGGTCGCAAGACCATCAAGGCC-CA-GA-A 3325886 Query 262093 GATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAA 262152 | |||||| ||||| ||| |||||| | |||||| || |||| |||| ||||||| Sbjct 3325887 GCTCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTCATGCTCTACAA 3325946 Query 262153 GGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAACCT 262212 |||||||| |||| | ||||||||| |||| || |||| | | ||||||| Sbjct 3325947 GGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGTACCATCAAGTCGTCCAACCT 3326006 Query 262213 GTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266 ||||| ||||| || ||| ||||||||| ||||| || |||||||| Sbjct 3326007 CTGCACTGAGATTATCGAGTACTCGTCGCCCGACGAGGTTGCCGTCTGCAACCT 3326060 Score = 89.7 bits (98), Expect = 7e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 1818059 GAGGTCGCCCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGAT-CT 1818117 ||||| | | ||| | | || ||||| ||||| || ||||||| || || |||| || Sbjct 405924 GAGGTAGACAATGTTGTATGGTGTCACACGCTCTGGGTAGGTGAGAATCATGGCGATACT 405865 Query 1818118 CATAGGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCG 1818177 ||| |||||| |||| ||| | | ||| | |||||| | ||||||| || | Sbjct 405864 GCGAGG-CACGCCGACCTGGTCGAGCTGAATGTTGGGGTCACCAGTAATGACGGTACGAG 405806 Query 1818178 CGGTAAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTT 1818235 ||| ||||| ||| |||||||||||| || || |||| | |||||||||||||| Sbjct 405805 CGGAAAAGTCGACACGCTTGCCCATGAGGTTTCCACGGAGACGACCCTCCTTGCCCTT 405748 >seq4 Length=2444609 Score = 113 bits (124), Expect = 6e-19 Identities = 137/186 (74%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 ||||||| ||||| | ||| | |||||||| ||| ||||| |||| || |||| ||| Sbjct 1247738 CAACAAGGCCATGGCCATCCTCAACTCGTTCGTCTCGGACATCTTCGAGCGTATCGCCAC 1247679 Query 725021 CGAGGCCGGTCGCCTGGCGCGCTCC----AACAAGCGCAACACGATCGGCACGCGCGAGA 725076 ||||||| || || |||| | ||| | ||| || ||| ||||||||| Sbjct 1247678 CGAGGCCT----CCAAGCTCGCTTCGTACAACCACCGCTCGACCATCTCGTCGCGCGAGA 1247623 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| ||||| || || ||| | | |||||| || ||| ||||||| ||||||||| Sbjct 1247622 TCCAGACTGCCGTCCGTCTCATCCTCCCCGGCGAGCTTTCCAAGCACGCCATCTCCGAGG 1247563 Query 725137 GCACCA 725142 |||||| Sbjct 1247562 GCACCA 1247557 Score = 86.0 bits (94), Expect = 9e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812 ||||| | || |||||||| | |||||||||||||||||| ||| ||||||||||| Sbjct 2100266 GACCTCATTACCTGGGGCGCTATTGGTGCGCGCACCACCGAGTCGCAGCTGCACCGCGAG 2100207 Query 165813 ATGGCGTC-GGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGG 165862 | || || || ||| || | ||| | |||||||| ||| |||||||||| Sbjct 2100206 CTTGCCTCGGGTGCT-TCGTTCCCCGTCGGCTTCAAGAACGGCACCGACGG 2100157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807631281994