Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 125 7e-24 seq2 120 3e-22 seq3 104 2e-17 >seq5 Length=2378914 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| || |||||||||||| Sbjct 2288890 CCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2288831 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| ||||| |||| |||||||| || || || Sbjct 2288830 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 2288771 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | ||||| ||||| || || Sbjct 2288770 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 2288711 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || ||||| | || || ||||| || ||||| Sbjct 2288710 TCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| |||||||||||||| | || | ||| ||| Sbjct 2289100 ACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCCTCG 2289041 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| |||||||| ||||| || || || || || || || Sbjct 2289040 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 2288981 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||||||||| || || ||||||||||| || || Sbjct 2288980 ATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTG 2288921 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| || ||||| Sbjct 2288920 CCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| || |||||||||||| | Sbjct 2288662 CCACCGCGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2288603 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || ||||| | ||||||||| ||||| || Sbjct 2288602 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 2288543 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||||||||| || || Sbjct 2288542 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATGGTGTCGGACGACTCGACC 2288483 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || ||||| Sbjct 2288482 TCGAGGGTGATGGTCTTGCCGGT 2288460 >seq2 Length=4282893 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || ||||||||||| | Sbjct 1078828 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1078887 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || || | ||||||||| || || || Sbjct 1078888 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1078947 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 1078948 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 1079007 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| || || || | || || ||||| || |||||| || Sbjct 1079008 TCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCATTCTG 1079058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 276/422 (65%), Gaps = 7/422 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| || || | || || ||||| || |||||||| | | | Sbjct 3325225 CAGCACATGATTATGCGTGTCGCCATCGGTATCCACGGTGACAACATTGACAAGGTCCTC 3325284 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | | ||||| | | ||||||||||| ||||||||| | || | Sbjct 3325285 GAGACCTACAACCTCATGTCGGAGCGTTACTTTACGCACGCCTCGCCCACCCTCTTCAAC 3325344 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || || || |||| ||||| || | | ||||| || ||| | Sbjct 3325345 GCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGACGACTCC 3325404 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGCG 7801 || ||||| || ||| |||| || | || |||||| | || ||| || || || |||| Sbjct 3325405 ATTGACGGTATCTACGACACCCT-CAAGACCTGCGCCCAGATCTCC-AAGACTGCTGGCG 3325462 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861 | || ||||| || | || || | |||||||| || ||| | ||||||| Sbjct 3325463 GTATCGGTCTCCACATCCACAACATTCGCGCCAAGGGCTCGTACATTGCCGGTACCAACG 3325522 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| |||| | | |||||| | |||| | | || | | | || | || | Sbjct 3325523 GTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCCACCGCTCGCTACGTCG 3325582 Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||||| || |||||| || ||| ||||||||| | ||||| |||||||||| Sbjct 3325583 ACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCGG 3325642 Query 7979 AC 7980 || Sbjct 3325643 AC 3325644 >seq3 Length=3276928 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| || |||| | ||| ||| Sbjct 2414487 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 2414428 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | |||||||| || || || ||||| || || || || Sbjct 2414427 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 2414368 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || ||||| ||||| || || || ||| Sbjct 2414367 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTA 2414308 Query 134685 CCGGT 134689 || || Sbjct 2414307 CCCGT 2414303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398166253240