Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 3e-11 >seq3 Length=3276928 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/243 (69%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGT 39570 ||| ||||| || || || ||||| || || ||| | |||||||| | || || | ||| Sbjct 1614041 TGGCAGAGCATCGGTGAGGAACTCCTTCTCAATGGCCACGGCCTCGCTGATAATTG-TGT 1613983 Query 39571 TACTACCTCATCACTCGGTGGA----TGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| || ||||| | | ||| | || || | | ||||| || |||| Sbjct 1613982 GA--ACCTCCTC-CTCGGAGCAGCGGTGCGTGAGGTGGTTGTATAGCAAGCACGCAAAGT 1613926 Query 39627 CACAATGTAGG--CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 | ||| || |||||||| | || | ||||| || ||||| | ||| |||| Sbjct 1613925 CGG--TGTGGGTACCCTCATCGCGCGAGATGAGCTCGTTTGAGAATGTCAATCCGCGCAT 1613868 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 ||||| || || |||||||| || ||||| ||||| || || || ||||||||||| || Sbjct 1613867 GAGACCGCGTTTCTTGAGCCAGAAAATGGCCGCAAACGAGCCCGAGAAGAAGATGCCCTC 1613808 Query 39745 TAC 39747 || Sbjct 1613807 GAC 1613805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908482304680