Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-47 seq5 111 2e-19 seq3 89.7 6e-13 seq7 87.8 2e-12 >seq2 Length=4282893 Score = 203 bits (224), Expect = 4e-47 Identities = 677/1045 (65%), Gaps = 25/1045 (2%) Strand=Plus/Minus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || |||||||| || ||||| | ||| | || | ||| ||||| || || || || || Sbjct 3326255 TCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTTCGAGTTGCGAGCC 3326196 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 || ||||| || | || || |||||| ||| || || ||||| || | ||| Sbjct 3326195 TCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 3326136 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 || || || || || | | | || | | | |||| | |||| | || Sbjct 3326135 CAAATGTCGTGGAGCTTCTTAAAGTCGTACGACTGGTTCTCAATGTCGACAAAGGCAGGG 3326076 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 ||||| || || || | ||||| || || ||| || | |||||| | ||| Sbjct 3326075 AGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAATC 3326016 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | |||||| ||| || || || | | || ||||| ||| |||| Sbjct 3326015 TCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGTTG 3325956 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || ||||||||||||||| |||| || ||||| ||||| | | ||| || || Sbjct 3325955 GCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCG 3325896 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTT 111468 ||| | | || | | || | |||| ||| ||| | || | | |||||| | Sbjct 3325895 AACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCAGCACGCTCGTAGCT 3325840 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTGTCT 111526 |||||||| ||||||||||| | | | |||||| ||| || || || | | Sbjct 3325839 CTCGTAGAGGGTCTCAAACTCCTC--CGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCG 3325782 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || || | || | ||| | ||| | |||| || ||||||||||| ||||| || ||| Sbjct 3325781 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 3325722 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || |||| | || || || | ||| |||| || | || ||||| || | Sbjct 3325721 CAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 3325662 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 |||||||| || | || ||||||||||| ||||| || |||| || | | || Sbjct 3325661 TCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGG-- 3325604 Query 111707 CGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 | ||| ||| | || | || ||||| || ||||| | | |||| ||||| Sbjct 3325603 -GGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATG 3325545 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCA 111818 || | ||||| | || | ||| || || || ||| ||||| | |||| | | Sbjct 3325544 GGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGCGAA 3325487 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | |||||||| | || ||||| ||||| ||| ||||| || || || | | | Sbjct 3325486 TGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGA 3325427 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | |||||||||| || ||||| ||||| |||||| ||||||||| |||| Sbjct 3325426 GGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACA 3325367 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 |||| || || ||||| || ||||||||||| || | ||||| | || || | Sbjct 3325366 TCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCT 3325307 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 ||||| || ||| ||||| | ||| ||||||| || |||||||| ||||| | Sbjct 3325306 CCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGG 3325247 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| ||||| | ||||| ||| || Sbjct 3325246 CGACACGCATAATCATGTGCTGGGG 3325222 Score = 109 bits (120), Expect = 7e-19 Identities = 283/426 (66%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 |||| ||||||||||| |||| ||||| ||||| ||||| || | || |||| ||| | Sbjct 1615540 AACCGGTACCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGA 1615599 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || || ||| | |||||||| | | ||||||||| | || | || || Sbjct 1615600 ATTCAGGCTCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAG 1615659 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803 | ||||||| || | | | || || || ||| |||| || | | | || Sbjct 1615660 AGTGAAAGATCGTGTGGGTCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGCAG 1615719 Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863 | || ||||||||| | ||||||||| || || || || || || ||||||| || Sbjct 1615720 CATCCTTACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGT 1615779 Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCA 181922 |||| ||| | | | | || | || ||||| || | || ||| |||| Sbjct 1615780 TGTTGCTACCGACAAACTTCTGCGCAAGACCGACAATGGTCATGAAC-AGAGACTGTTCA 1615838 Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCATTTC 181981 ||||||||||| || | || || | |||||| || |||| ||| || ||||| || || Sbjct 1615839 CCGTGGTGGTATGCAGTGTTTTCGGAAACATA-ACCTCCAAGCTGAGCGACCTTGATCTC 1615897 Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACC 182041 | |||||||| | ||||| ||| | | || || | ||| |||||||||||| Sbjct 1615898 CTTCTTGAGGTTACGCTTAAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAGACC 1615957 Query 182042 ATCCGC 182047 || || Sbjct 1615958 GTCGGC 1615963 >seq5 Length=2378914 Score = 111 bits (122), Expect = 2e-19 Identities = 236/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| ||||| || | ||| |||||||||||| | |||| || | |||||| || || Sbjct 2242610 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCAAT 2242551 Query 122541 GAGGTTACATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| ||| ||| || ||||| || |||| | | |||||| | || ||||| | Sbjct 2242550 GAGCG-ACACGGGGAGGGCGTCGGTGAGGAACTCCTGCTCAATGGCGACGGCCTCGCGGA 2242492 Query 122600 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGG 122659 ||| || ||| || || | ||| | ||| | |||| || || Sbjct 2242491 TGATCCTGTTGATGGTGTCCGGGTGGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGG 2242432 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 |||| || |||||||||||| || || || || || || || |||||| ||||| | Sbjct 2242431 CAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 2242372 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||||| |||||||| | ||| | || | |||| || || || |||||||||||| Sbjct 2242371 GCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCA-AACGAGCCCGAGAAGAAGATA 2242313 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG 122824 ||||| || ||||| || | || || ||||| || || |||| Sbjct 2242312 CCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGA-CGAG 2242268 >seq3 Length=3276928 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||| ||||||||| || || || || || |||||||| | || Sbjct 1613932 GCAAAGTCGGTGTGGGTACCCTCATCGCGCGAGATGAGCTCGTTTGAGAATGTCAATCCG 1613873 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 |||||||||| || ||||| | ||| |||| || ||| || || || ||||||||||| Sbjct 1613872 CGCATGAGACCGCGTTTCTTGAGCCAGAAAATGGCCGCA-AACGAGCCCGAGAAGAAGAT 1613814 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGT 122808 ||||| ||||| || || |||| |||||| Sbjct 1613813 GCCCTCGACACAAGCGAAAGCAATGAGGCGT 1613783 >seq7 Length=1599831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 ||| || ||||| |||||||| || || |||| || || || ||| | | || | Sbjct 731237 CTTTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTGCTGT 731178 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | || || ||||| || | |||||| ||||| ||||||||||| || || | | Sbjct 731177 CGCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACTCGGA 731118 Query 11740 GGCAGAGCACTGGATGAATGGG-ACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 | || ||| | | | | ||| || || | ||||| || |||| ||| || || | Sbjct 731117 ACCCGA-CACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGCAGAG 731059 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 |||| || ||||| || |||| || | ||| || ||||| ||||||||||| || Sbjct 731058 TCTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACCGAGCT 730999 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 || || ||| ||| | |||||| || | |||| ||| || || || ||||| Sbjct 730998 TC--TCGTACTTCTGGGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGC 730941 Query 11917 CGCGTCAATCCCCTCAACATCACTGAAGCG 11946 | |||| || || | || || | |||||| Sbjct 730940 CTCGTCCATACCGGCCACGTCGCGGAAGCG 730911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031709535200