Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 212 8e-50 seq5 156 5e-33 seq3 113 6e-20 seq7 82.4 9e-11 >seq2 Length=4282893 Score = 212 bits (234), Expect = 8e-50 Identities = 678/1045 (65%), Gaps = 25/1045 (2%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || |||||||| |||||||| || || | ||||| || | ||| || || || ||||| Sbjct 3326255 TCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTTCGAGTTGCGAGCC 3326196 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 || ||||| || | ||| | || ||| | || || |||||||| ||||| Sbjct 3326195 TCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 3326136 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAG 118704 || || || ||||| | | || | |||| |||| | |||| | || Sbjct 3326135 CAAATGTCGTGGAGCTTCTTAAAGTCGTACGACTGGT--TCTCAATGTCGACAAAGGCAG 3326078 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 | ||||| || || || || || || || | ||| || | |||||| |||| Sbjct 3326077 GGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAA 3326018 Query 118765 TTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824 | || ||||| | ||| || ||| ||||| || | || || || || ||||| | || Sbjct 3326017 TCTCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGT 3325958 Query 118825 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 118884 | || |||||||| |||||| | || || ||||| || |||| || ||| || | Sbjct 3325957 TGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGG 3325898 Query 118885 CCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTC------CTCG 118937 | ||||| | || | || | ||| ||| || |||| | |||| Sbjct 3325897 CGAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCAGCACGCTCG 3325845 Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 || | |||||||| |||||||| || | | || | ||| || || || Sbjct 3325844 TAGCTCTCGTAGAGGGTCTCAAACTCCTCCGAGTGGACGTCGGCGAGGCCGGGGCACTCG 3325785 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||| | ||| | ||| | |||| || ||||||||||||||||| ||| Sbjct 3325784 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGG 3325725 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 |||||||| || |||| || || || ||| | || || | || || || ||| Sbjct 3325724 ATCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGC 3325665 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | || | ||||| | || ||||||||||| || || ||||| | || | | || Sbjct 3325664 AGGTCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCG 3325605 Query 119178 TTACGACG---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 || |||| |||||| || || | || ||||| | | | || ||||| Sbjct 3325604 GGGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATG 3325545 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGA 119292 || | |||||| | ||| | || || || || ||| ||||| | | |||| | | Sbjct 3325544 GGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGCGAA 3325487 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||||||||| | ||| ||||| || || ||| ||||| || ||||| | ||| Sbjct 3325486 TGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGA 3325427 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | || ||||||| || || || ||||| |||| | |||| |||||||| ||||| Sbjct 3325426 GGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACA 3325367 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT 119472 | || || || ||||| ||||||||||| || || | ||||| | || || | Sbjct 3325366 TCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCT 3325307 Query 119473 GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 119532 ||||| || ||||||||| | ||| | ||||| || ||||| |||||||| | Sbjct 3325306 CCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGG 3325247 Query 119533 AGACCCGCATAAACATGTATTGGGG 119557 ||| ||||||| ||||| ||||| Sbjct 3325246 CGACACGCATAATCATGTGCTGGGG 3325222 >seq5 Length=2378914 Score = 156 bits (172), Expect = 5e-33 Identities = 240/340 (71%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 ||| ||||| || | ||| |||||||||||| |||| || || |||||| || || Sbjct 2242610 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCAAT 2242551 Query 129898 GAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 ||| ||| ||| || ||||| || |||| ||| ||||||| | || || || || | Sbjct 2242550 GAGCG-ACACGGGGAGGGCGTCGGTGAGGAACTCCTGCTCAATGGCGACGGCCTCGCGGA 2242492 Query 129957 CGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG 130016 ||| || ||||| |||| | || | || | |||| || || Sbjct 2242491 TGATCCTGTTGATGGTGTCCGGGTGGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGG 2242432 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 |||| || |||||||||||||||||| |||||||| || || |||||| ||||| | Sbjct 2242431 CAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 2242372 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 |||||||||| |||||||| | |||||| || | ||| ||||| ||||||||||| | Sbjct 2242371 GCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATAC 2242312 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 |||| || || || || | ||||||||| ||||| || Sbjct 2242311 CCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGA 2242272 >seq3 Length=3276928 Score = 113 bits (124), Expect = 6e-20 Identities = 196/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 129887 TTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACA 129946 || |||||||| || |||||| || || || || |||| ||||||||||| |||| Sbjct 1614061 TTGATACCGATAAGCGCACATGGCAGAGCATCGGTGAGGAACTCCTTCTCAATGGCCACG 1614002 Query 129947 GCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTC-TTGAA 130005 || || | | || | ||||| |||| | || |||| | || ||| | Sbjct 1614001 GCCTCGCTGATAATTGTGTGAACCTCCTCCTCGG-AGCAGCGGTGCGTGAGGTGGTTGTA 1613943 Query 130006 GAGTTC-CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 130064 || |||| |||| || |||| |||||| || || |||||||| || || |||| Sbjct 1613942 TAGCAAGCACG-CAAAGTCGGTGTGGGTACCCTCATCGCGCGAGATGAGCTCGTTTGAGA 1613884 Query 130065 AGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAG 130124 | || || |||||||||| || ||||| | ||||||||| || ||| ||||| | Sbjct 1613883 ATGTCAATCCGCGCATGAGACCGCGTTTCTTGAGCCAGAAAATGGCCGCAAACGAGCCCG 1613824 Query 130125 AGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACG 130164 |||||||||| ||||| ||||| ||||| |||| ||| || Sbjct 1613823 AGAAGAAGATGCCCTCGACACAAGCGAAAGCAATGAGGCG 1613784 >seq7 Length=1599831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 272/419 (65%), Gaps = 7/419 (2%) Strand=Plus/Minus Query 14053 GGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCG 14112 || ||| | ||| || || || || || || | |||||| |||| || | ||| || Sbjct 731420 GGCGATGTGACGGTCGAAACGGCCGGGACGCATGAGGGCAGCGTCGAGAACATCGGGACG 731361 Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || | |||| || || || | || | || ||||| |||||||| || Sbjct 731360 GTTGGTACCGGCGAGAACGACAATATGCTCCTTGGTAGAGAAGCCGTCCATCTCGACCAG 731301 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTG----C 14228 || || |||| ||| || || || || || || | || || |||| || | Sbjct 731300 GATCTGGTTGAGGGTCGTCTCACGCTCGTCGTT-GCCGCCAAACTGTCCGCCCTTACCAC 731242 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGG 14288 | ||| ||||| |||||||| || ||||| || | ||| || || ||| | | | Sbjct 731241 GGGCCTTTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTG 731182 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | | || | || ||||| | | |||||||||||| ||||||||||| || || | Sbjct 731181 CTGTCGCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACT 731122 Query 14349 TGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 || | | ||| | | |||||| || || | ||||| || |||| ||| || Sbjct 731121 CGGAACCCG-ACACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGC 731063 Query 14408 AGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || ||||| || || || || || | || | ||||||||| || ||| ||||||| Sbjct 731062 AGAGTCTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACC 731004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434913973720