Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 seq5 150 2e-31 seq7 102 1e-16 seq3 95.1 1e-14 >seq2 Length=4282893 Score = 206 bits (228), Expect = 3e-48 Identities = 680/1054 (65%), Gaps = 25/1054 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || ||||||||||| || || || ||||||| ||| Sbjct 3325222 CCCCAGCACATGATTATGCGTGTCGCCATCGGTATCCACGGTGACAACATTGACAAGGTC 3325281 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || ||||| | || || | ||||| | || ||||||||| Sbjct 3325282 CTCGAGACCTACAACCTCATGTCGGAGCGTTACTTTACGCACGCCTCGCCCACCCTCTTC 3325341 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || ||||| ||||| ||||||||| |||||| ||||| ||| Sbjct 3325342 AACGCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGACGAC 3325401 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || |||||||||| | || || | | || || || ||||| ||| ||||| Sbjct 3325402 TCCATTGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGC 3325461 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 104519 ||||| || | |||||||| | | | |||| | ||||| ||| || || | Sbjct 3325462 GGTATCGGTCTCCACATCCACAACATTCGCGCCA--AGGGCTCGTACATTGCCGGTACCA 3325519 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| | || | ||||| | || ||||| |||| | | ||||| || ||||| | Sbjct 3325520 ACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCCACCGCTCGCTACG 3325579 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||| | || | | || |||| || ||||| |||| Sbjct 3325580 TCGACCAGGGTGGTAACAAGCGCC---CCGGTGCCTTTGCCATCTACCTCGAGCCCTGGC 3325636 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 ||||||| || | || |||||||| |||| ||||| || | ||||||| || Sbjct 3325637 ACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTG 3325696 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || |||| ||| |||||||| || || |||||||||||| | || |||| Sbjct 3325697 CCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCG 3325756 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||| | ||| | || || | | || || || ||| |||| | | | Sbjct 3325757 ACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTCCACTCGG 3325816 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG------GAAGAAGGTCGGGCGACTGCGA 104867 |||||||||| |||| ||| | |||||| | | ||||| ||| | Sbjct 3325817 AGGAGTTTGAGACCCTCTACGAGAGCTACGAGCGTGCTGGCAAGGGTCGCAAGACCATCA 3325876 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| || || ||| || | || |||||||||||| | Sbjct 3325877 AGG-CCCAGAAGC-----TCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCC 3325930 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| |||||| ||| ||| || || || | | ||| | Sbjct 3325931 CCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGTACCA 3325990 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| ||||| ||||| || || || | || | | || ||| || | Sbjct 3325991 TCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCGTCGCCCGACGAGGTTGCCG 3326050 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || ||||| || || || || ||||| | ||| || |||| || | | | Sbjct 3326051 TCTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACATTGAGAACCAGTCGTACG 3326110 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | | || |||||||| || || |||||||| ||||| || || ||| Sbjct 3326111 ACTTTAAGAAGCTCCACGACATTTGCAAGGTCGTCACCAAGAACCTCGACCAGGTCATTA 3326170 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | |||||||| || ||||| || || || ||| | ||||| || | | Sbjct 3326171 CCAAGAACTACTACCCCGTCCAGGAGGCTCGCAACTCGAACATGCGCCACCGCCCCGTCG 3326230 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 |||| ||||| ||||||||||| || | ||||| Sbjct 3326231 GTCTTGGTGTCCAGGGTCTCGCCGACGCCTTCAT 3326264 Score = 120 bits (132), Expect = 4e-22 Identities = 327/494 (66%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| ||||||||||| || | ||| || ||||| |||||||||| || |||| ||||| Sbjct 1615540 AACCGGTACCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGA 1615599 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | || ||||| ||| | ||||| ||| | | |||||||||| | || || | Sbjct 1615600 ATTCAGGCTCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAG 1615659 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTG--AGCTTTGTAAAGATATACCTCGTTTGAGA 168453 | ||||||| | ||| || | | | | || || |||| || | | | Sbjct 1615660 AGTGAAAGATCGTGTGGG--TCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGC 1615717 Query 168454 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 168513 ||||||||||||||| | ||||||||| ||||| || || || || || || | Sbjct 1615718 AGCATCCTTACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAAC 1615777 Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC--T 168571 ||||| ||| | | | | ||| | |||||| ||| | |||||| | Sbjct 1615778 GTTGTTGCTACCGACAAACTTCTGCGCAAGACCGACAAT--GGTCATGAACAGAGACTGT 1615835 Query 168572 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCAT 168630 |||||||||||||| ||| | || || | ||| | || |||| ||| || || || || Sbjct 1615836 TCACCGTGGTGGTATGCAGTGTTTTCGGAAACATA-ACCTCCAAGCTGAGCGACCTTGAT 1615894 Query 168631 CTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAG 168690 ||| | |||||| || | ||||| || | | ||||||||| || ||||||||| Sbjct 1615895 CTCCTTCTTGAGGTTACGCTTAAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAG 1615954 Query 168691 ACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTC 168750 ||| || || | | || ||||| | |||||||| |||| | ||| || Sbjct 1615955 ACCGTCGGCGACCGAGGGAATGGAACGAATGTTGTCCGCCATGGAGAAGAGAATGAGCTC 1616014 Query 168751 CTTGTGTACAAAGT 168764 ||||| ||||||| Sbjct 1616015 CTTGTTGACAAAGT 1616028 >seq5 Length=2378914 Score = 150 bits (166), Expect = 2e-31 Identities = 132/162 (81%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || ||||| ||||| ||| |||| ||||| || ||||||||||||||||| || || Sbjct 2242272 TCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCG 2242331 Query 94855 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || |||| | || | |||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 2242332 TT-TGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAA 2242390 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| ||||| ||||||||||| |||||| || ||||| Sbjct 2242391 CGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 2242432 >seq7 Length=1599831 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 |||||| || || |||||||| || || |||| |||||| || ||| | | || Sbjct 731237 CTTTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTGCTGT 731178 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || || || || |||||| ||| || ||||| ||||||||||| || || | | Sbjct 731177 CGCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACTCGGA 731118 Query 9814 GGCGGAACATTGGATG-AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | || || | | | ||||| || || | ||||| ||| |||| ||| || |||| Sbjct 731117 ACCCGA-CACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGCAGAG 731059 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||||| ||||| || |||| |||| |||||| || ||||||||||| || Sbjct 731058 TCTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACC 731004 >seq3 Length=3276928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTAT 94865 || ||| | || || || ||||| ||||| ||||||||||| || || || ||| || || Sbjct 1613784 CGCCTCATTGCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCAT 1613842 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 || ||||||||||| || |||||||||| || | ||||| |||||||| ||||| Sbjct 1613843 TTTCTGGCTCAAGAAACGCGGTCTCATGCGCGGATTGACATTCTCAAACGAGCTCATCTC 1613902 Query 94926 TCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || || ||||| |||| || |||||| Sbjct 1613903 GCGCGATGAGGGTACCCACACCGACTTTGCG 1613933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260530241880