Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 149 2e-30 seq5 123 8e-23 seq2 96.9 1e-14 >seq3 Length=3276928 Score = 149 bits (164), Expect = 2e-30 Identities = 462/712 (65%), Gaps = 11/712 (2%) Strand=Plus/Plus Query 349217 GGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAAT 349276 |||||||| || || ||||| || || ||||| ||||| || || || || || || || Sbjct 391871 GGTACTACCTACTCCTGTGTCGCCGTCTGGCAGAATGACCGCGTTGAGATCATCGCCAAC 391930 Query 349277 GATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATT 349336 || || |||||| | || || || || ||||| || || ||||| | |||||| | || Sbjct 391931 GACCAGGGTAACCGCACCACCCCCTCCTACGTCGCTTTCACCGACTCGGAGCGTCTCATC 391990 Query 349337 GGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAG 349396 ||||| | || || || || | ||| ||||| | || || || || || || ||| Sbjct 391991 GGTGACGCCGCCAAGAACCAGGTCGCTATGAATCCCTATAACACCGTCTTCGACGCGAAG 392050 Query 349397 CGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGATCTAAAACATTT 349452 || || || ||| | | || | ||| | || || ||||| || || | Sbjct 392051 CGCCTCATCGGTCGCAAGTTCGCAGACGCTGAGGTC----CAGTCTGACTGCAAGCACTG 392106 Query 349453 TCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGG 349512 || || | || || | ||| | | | || || |||| || || || Sbjct 392107 GCCCTTCAAGGTCATTG-ACAAGGCAACCA--AGCCGTACATCCAGGTGGAGTACCGCGG 392163 Query 349513 TGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGA 349572 || || | || | ||||| || ||||| || ||||| | | || ||| || Sbjct 392164 CGAGACCAAGGAGTTCTCCCCCGAGGAGATTTCTTCTATGGTCCTGATCAAGATGCGTGA 392223 Query 349573 AATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTA 349632 ||||||| || || | |||| || || | | || || | ||||| || ||||| Sbjct 392224 GGTTGCTGAGGCCTACCTCGGTGGCACCGTCTCCAAGGCCGTCGTCACTGTCCCTGCCTA 392283 Query 349633 TTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGT 349692 || || || | |||||| || || || || ||||||| ||| || || | | || Sbjct 392284 CTTCAACGACTCGCAGCGTCAGGCTACCAAGGACGCTGGCACCATCGCCGGCCTCGACGT 392343 Query 349693 TCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAG 349752 || | || || || || || || || || || || || || || || || || | ||| Sbjct 392344 CCTCCGTATCATCAACGAGCCTACCGCCGCCGCTATCGCCTACGGCCTCGACAAGAAGAG 392403 Query 349753 TGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACT 349812 || || || || | || || ||||| | ||||||||||| || || || || || Sbjct 392404 CGAGGGTGAGAAGAACGTCCTCATCTTTGACCTCGGTGGTGGTACCTTCGACGTGTCTCT 392463 Query 349813 ACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGG 349872 || || | || ||||| || || || || || || ||||||||||| || || || || Sbjct 392464 CCTCACCATCGAGGAGGGCATCTTCGAGGTCAAGGCCACTGCTGGTGACACCCACCTCGG 392523 Query 349873 TGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 ||| || || ||||| || || || || ||||| ||| | ||||| ||| Sbjct 392524 TGGCGAGGACTTTGACAACCGCCTGGTCAACCATTTCGTTCAGGAATTCAAG 392575 >seq5 Length=2378914 Score = 123 bits (136), Expect = 8e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 2288894 CATACCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 2288835 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || |||||||| || || ||||| ||||| Sbjct 2288834 GGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGG 2288775 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || |||||||| || ||| || || || || || | ||||| | | Sbjct 2288774 GGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTGTCAGACGACT 2288716 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| ||||| || || || || || |||||||| Sbjct 2288715 CGACCTCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 >seq2 Length=4282893 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 1078825 ATACCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 1078884 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 1078885 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGG 1078944 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || || || || || | || || | || Sbjct 1078945 GGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCG 1079004 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || || || || || || ||||||||| Sbjct 1079005 ACCTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCATT 1079055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253681674711