Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 316 2e-81 >seq2 Length=4282893 Score = 316 bits (350), Expect = 2e-81 Identities = 541/779 (69%), Gaps = 22/779 (3%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| |||||| | ||||||||||||||| || | || | |||| ||||| ||| | Sbjct 3325237 ATGCGTGTCGCCATCGGTATCCACGGTGACAACATTGACAAG-GTCCTCGAGACCTACAA 3325295 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| | ||||||||||||||| |||| ||||| |||||||| ||||| Sbjct 3325296 CCTCATGTCGGAGCGTTACTTTACGCACGCCTCGCCCACCCTCTTCAACGCCGGTACCCC 3325355 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 |||||| ||||||||| |||||||| || || |||||||| ||||| || ||||| || Sbjct 3325356 TCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGACGACTCCATTGACGGTAT 3325415 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || |||||| || ||||| ||||||||| | || ||||||||| |||| Sbjct 3325416 CTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGCGGTATCGGTCTCCA 3325475 Query 53434 CTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 | | ||| | || || || ||| | || || || ||||| | || | || Sbjct 3325476 CATCCACAACATTCGCGCCAAGGGCTCGTACATTGCCGGTACCAACGGTTACTCCAACGG 3325535 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 ||||| || |||||||||| || | | ||| || || |||||| ||||||||||| Sbjct 3325536 TATCGTCCCCATGCTCCGCGCCTACGATGCCACCGCTCGCTACGTCGACCAGGGTGGTAA 3325595 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 |||||| || | || ||||||||||||||||| |||||||| ||| | | || || Sbjct 3325596 CAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCGGACGTCTTTGACTT 3325655 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAG 53672 || || ||||| ||| || || | || ||| | || |||||||||||| ||| | Sbjct 3325656 CCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGACCTGTTCTAC-G 3325714 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || ||||| || |||||||||||| | || ||| |||| || ||| ||| | Sbjct 3325715 CCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCGACGGTGACTGGACCCTCA 3325774 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT---------A 53783 ||||||| |||||||||||||||| | ||| || ||||||||| Sbjct 3325775 TGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTCCACTCGGAGGAGTTTGAGACCCTCT 3325834 Query 53784 ACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 |||||| || || ||| || | |||| ||| |||| ||||||| | Sbjct 3325835 ACGAGAGCTA-CGAGCGT--GCTGGCAAGGGTCGC------AAGACCATCAAGGCCCAGA 3325885 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 || | ||| || |||||| || |||| ||||| || || | |||| ||||| Sbjct 3325886 AGCTCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTCATGCTCTACA 3325945 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||| | | |||| ||| |||||| || || |||| |||||| ||| |||| Sbjct 3325946 AGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGTACCATCAAGTCGTCCAAC 3326004 Score = 145 bits (160), Expect = 8e-30 Identities = 308/455 (68%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || |||||||| || |||||||| | || | ||| || ||| || | |||||| Sbjct 1615542 CCGGTACCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGAAT 1615601 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 |||||||| | | | || || || | ||| ||||| | ||||||||| | Sbjct 1615602 TCAGGCTCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAGAG 1615661 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | || || | | |||| | | | | ||| | |||||||||| ||| |||||| Sbjct 1615662 TGAAAGATCGTGTGGGTCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGCAGCA 1615721 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 ||||| ||||| || |||||||||||| ||||| | || || | ||||| | |||| Sbjct 1615722 TCCTTACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGTTG 1615781 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG----GAGGCTCGCCTC 117447 ||| || ||||| || || || | |||||| || | || ||| || || Sbjct 1615782 TTGCTACCGACAAACTTCTGCGCAAGACCGACAATGGT--CATGAACAGAGACT--GTTC 1615837 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 ||| ||||| || || || | || | || || || | |||||||| ||||| || || Sbjct 1615838 ACCGTGGTGGTATGCAGTGTTTTCGGAAACATAACCTCCAAGCTGAGCGACCTTGATCTC 1615897 Query 117508 TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACC 117567 | | ||||| ||| | ||| ||| ||| ||||||||||||| ||||| ||||| Sbjct 1615898 CTTCTTGAGGTTACGCTTAAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAGACC 1615957 Query 117568 ATCCGCCACGTGAGGG-ATCGAACGCTTGATGTCC 117601 || || || ||||| || ||||| || ||||| Sbjct 1615958 GTCGGCGAC-CGAGGGAATGGAACGAATGTTGTCC 1615991 Score = 111 bits (122), Expect = 2e-19 Identities = 297/452 (66%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||||||||| || || ||||| ||||| || | ||| || || | || ||| || Sbjct 1615542 CCGGTACCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGAAT 1615601 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | || || ||||| | | ||| || | || | |||||| || | Sbjct 1615602 TCAGGCTCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAGAG 1615661 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | || ||| | ||||| | | ||| ||||||| || | ||| || ||| Sbjct 1615662 TGAAAGATCGTGTGGGTCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGCAGCA 1615721 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||| ||||| | ||||| || |||||||| ||| ||||| ||||| | |||| Sbjct 1615722 TCCTTACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGTTG 1615781 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTG--CAGACTCGCTTCAC 152173 ||| || || || ||||| || | | ||||| || | || |||| | ||||| Sbjct 1615782 TTGCTACCGACAAACTTCTGCGCAAGACCGACAATGGT--CATGAACAGAGACTGTTCAC 1615839 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 ||||||| || || || | || | | || || | | ||| || ||||| || ||| Sbjct 1615840 CGTGGTGGTATGCAGTGTTTTCGGAAACATAACCTCCAAGCTGAGCGACCTTGATCTCCT 1615899 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 || | ||||| ||| | || || ||| ||||||||||| || || | ||||| Sbjct 1615900 TCTTGAGGTTACGCTTAAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAGACCGT 1615959 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 | | || ||||| ||||| || ||||| Sbjct 1615960 CGGCGACCGAGGGAATGGAACGAATGTTGTCC 1615991 Score = 109 bits (120), Expect = 6e-19 Identities = 552/857 (64%), Gaps = 42/857 (5%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGA-AGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||||| ||||| | | | | || || || |||||| ||| |||||| Sbjct 3326110 GACTTTAAGAAGCTCCACGACATTTGCAAG-GTCGTCACCAAGAACCTCGACCAGGTCAT 3326168 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 |||||| |||||||| | | ||| ||||| || ||| | || ||||| ||| | Sbjct 3326169 TACCAAGAACTACTACCCCGTCCAGGAGGCTCGCAACTCGAACATGCGCCACCGCCCCGT 3326228 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTC 55275 || | ||||| ||||| | |||||| ||||||| ||| | ||||||||||||| Sbjct 3326229 CGGTCTTGGTGTCCAGGGTCTCGCCGACGCCTTCATGGCTCTCCGCCTGCCCTTCGACTC 3326288 Query 55276 GGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCG 55334 | ||||||| || | |||| | |||||| || | ||||||| || || |||| Sbjct 3326289 GCCCGCTGCTCGTGAGCTCAACCTCAAGATCTTCGAGAC-CATCTACCACGCTGCTCTCG 3326347 Query 55335 AGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC- 55392 ||| |||||| | |||| | ||| |||| | ||| ||| | | ||||| Sbjct 3326348 AGGCTTCGTGTGAGATGGCCCAGGAGA-AGGGCAAGTACCCCTCGTACGAGGGCTCGCCC 3326406 Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCA------TGTT 55446 | || || || | |||||| ||| | ||| || || ||||| | | Sbjct 3326407 ATCTCGCAGGGCAAG-CTCCAGCCCGACATGTGG---AACCGTGTCCCCACCGACCTCTG 3326462 Query 55447 TGACAAGTTGAAGCA---TG---ACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGT 55500 ||| | ||| || ||||| | | || | |||||||| |||||||| Sbjct 3326463 GGACTGGACCGAGCTCCGTGCCAACATTGCCCAGCACGGTGTCCGCAACTCGCTGCTCGT 3326522 Query 55501 GGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCC 55560 ||||| ||||| || || ||||| | ||||| | ||| |||||| || ||||| Sbjct 3326523 CGCGCCCATGCCCACTGCCTCGACCTCGCAGATTCTTGGCTGGAACGAGTGCTTTGAGCC 3326582 Query 55561 GTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT---GTCATGATCAA 55617 ||||| | | | ||| || || || | ||||| || ||| | | Sbjct 3326583 CTACACCTCGATGCTTTACGCCCGTCGTGTGCTCTCGGGTGACTTCCAGGTCGTCTGCCC 3326642 Query 55618 CAAGCACCTC-GTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--C 55674 | || |||| || ||||| || || || ||| || | |||| |||| | Sbjct 3326643 CTGGCTCCTCCGT----GACCTCATCAACCTCGGCATCTGGGACGAGGAGATGAAGAACC 3326698 Query 55675 GGATATTGTGCGGAACGGGGGGT-CCGTCCAGAA---TCTGGAGATTCCTCTGCGT-CTC 55729 || | ||| |||| ||| || ||||| | || | ||||| | || || Sbjct 3326699 TCATCAT-TGCCT--CGGGTGGTTCCATCCAGCACATTCCCAACATTCC-CGACGAGCTG 3326754 Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| || ||| ||| || |||||| || | |||||| | | |||||| | || Sbjct 3326755 AAGGCCATCTACAAGACTGTCTGGGAGGTTTCGCAGAAGGCTGTCATTGACCTCGCCGCC 3326814 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || ||||| |||| |||||||||||| ||||| || |||||| | || || || || Sbjct 3326815 GACCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCCAACCCCTCG 3326874 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 | | || | | |||||||||||| ||||| |||||| || |||||||| ||| Sbjct 3326875 TTCTCGCAGCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGTCTCAAGACTGGTGCC 3326934 Query 55910 TACTATCTGCGGACCCG 55926 ||||| || || ||||| Sbjct 3326935 TACTACCTCCGCACCCG 3326951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215746912600