Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 342 6e-89 seq5 167 3e-36 seq3 120 3e-22 >seq2 Length=4282893 Score = 342 bits (378), Expect = 6e-89 Identities = 817/1224 (67%), Gaps = 21/1224 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| |||| | |||||| ||| || || ||| || ||| |||| Sbjct 3326439 CCACATGTCGGGCTGGAGCTTGCCCTGCGAGATGGGCGAGCCCTCGTACGAGGGGTACTT 3326380 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||| | || ||||| ||||||||| || || || ||||| || ||| ||| || Sbjct 3326379 GCCCTTCTCCTGGGCCATCTCACACGAAGCCTCGAGAGCAGCGTGGTAGATGGTCTCGAA 3326320 Query 80661 GACGCCCTTG---TTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCAT 80717 || |||| || | | || || || |||||| | || || | ||| Sbjct 3326319 GAT---CTTGAGGTTGAGCTCACGAGCAGCGGGCGAGTCGAAGGGCAGGCGGAGAGCCAT 3326263 Query 80718 GAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TC 80776 ||| |||| || || ||||| || || | ||| |||||||||||| ||||||| | Sbjct 3326262 GAAGGCGTCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTTCGAGTT 3326203 Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAA 80836 || | ||||| | | ||||| |||| || ||||| ||| ||||| || | Sbjct 3326202 GCGAG-CCTCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTCGAGGTTCTTGGTGA 3326144 Query 80837 CAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCTTC---ACAA 80890 | ||| || || || || |||| ||||||| | |||||| | | |||| Sbjct 3326143 CGACCTTGCAAATGTCGTGGAGCTTCTTAAAGTCGTACGACTGGTTCTCAATGTCGACAA 3326084 Query 80891 ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACT 80950 | || || ||| | || || || ||||| ||||| ||||| || | | ||| Sbjct 3326083 AGGCAGGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACT 3326024 Query 80951 CGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACT 81010 ||| || || ||||| | || || ||||| || ||||| |||| | |||||| |||| Sbjct 3326023 CGATAATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACT 3325964 Query 81011 TGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGA 81070 ||| |||| |||||||||||| |||| | ||| ||| |||||| ||| | || || Sbjct 3325963 TGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGA 3325904 Query 81071 GGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACAT 81130 |||||||| ||| | || | ||||||| |||||| ||||| | | | | Sbjct 3325903 GGATGGCGAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCAGCACGCTCGT 3325844 Query 81131 ACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189 | | |||| || || || |||| | ||| | || | |||| | ||||||||| Sbjct 3325843 AGCTCTCGTAGAGGGTC-TCAAACTCCTCCGAGTGGACGTCGGCGAGGCCGGGGCACTCG 3325785 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 |||||||| ||| |||||| |||| ||| ||| ||||||||| ||| ||| Sbjct 3325784 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGG 3325725 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 |||||||||||| ||||||||| ||| || ||||||| | || ||||| |||| Sbjct 3325724 ATCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGC 3325665 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369 | || || ||||| | || |||||| ||||| ||||| || || | ||| | | || Sbjct 3325664 AGGTCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCG 3325605 Query 81370 TTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 ||| | |||||||||| |||||| || || || || | | | || | ||| Sbjct 3325604 GGGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATG 3325545 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486 |||| |||||| | || | |||||| ||||| | || ||| ||||||||||| | Sbjct 3325544 GGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATG 3325485 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 ||| ||| |||||||| || || | ||| || ||||| || || || | | Sbjct 3325484 TTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGG 3325425 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || || || || || || ||| || | |||||| | | | ||| || |||||| Sbjct 3325424 GTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACATC 3325365 Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 || ||| | ||||| ||||| || || || | ||||| | || ||||| | Sbjct 3325364 TGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCC 3325305 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCGATAGC 81725 ||||| |||| ||||| || ||| | || ||| | ||||||||| |||||||| || Sbjct 3325304 GACATGAGGTTGTAGGTCTCGAGGAC-CTTGTCAATGTTGTCACCGTGGATACCGATGGC 3325246 Query 81726 TACACGCATAAACATGTACTGGGG 81749 |||||||||| ||||| |||||| Sbjct 3325245 GACACGCATAATCATGTGCTGGGG 3325222 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||||||||| || |||||||| || || || ||||| ||||| Sbjct 1079055 AATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 1078996 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||| || || || ||||| Sbjct 1078995 GGACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1078936 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | || ||||| | ||||| || Sbjct 1078935 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 1078876 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | || || || ||||| Sbjct 1078875 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGCCTCCGTGGTGG 1078828 Score = 141 bits (156), Expect = 1e-28 Identities = 300/444 (68%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || |||||||| || || ||||| ||||||||| ||||||||||| | | || Sbjct 1615981 CGTTCCATTCCCTCGGTCGCCGACGGTCTCAAGCCTGGTCAGCGCAAGGTTCTTTTTGCG 1615922 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| | ||| ||||| || || || ||||| || ||||| || || || | Sbjct 1615921 TGCTTTAAGCGTAACCTCAAGAAGGAGATCAAGGTCGCTCAGCTTGGAGGTTATGTTTCC 1615862 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTC--CAGGGCACCATTGTCAACCTTG 32140 || | || || || |||||||| || ||| || || | ||||||||| |||| Sbjct 1615861 GAAAACACTGCATACCACCACGGTGAACAGTCTCTGTTCATG--ACCATTGTCGGTCTTG 1615804 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||||| ||||||||| || ||| | ||| | ||||| || |||||||| || | Sbjct 1615803 CGCAGAAGTTTGTCGGTAGCAACAACGTTAACCTGCTCGACCCCAACGGACAGTTCGGTA 1615744 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC--CGTCTCGC 32258 | || | ||||| ||||||||||||||| | |||||||||| |||| | | | | Sbjct 1615743 CGCGTATTCAGGGTGGTAAGGATGCTGCGAGCGCTCGTTACATCTACACCAACATTCCCC 1615684 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318 | | ||| | || ||| || || | | ||| ||||| | ||||| ||| | |||| Sbjct 1615683 GCAT--GACCCACACGATCTTTCACTCTGCCGACAATGCGCTTCTCAACTACCTTGTTGA 1615626 Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378 ||| || ||| | ||||||| | |||||| || | || ||| | | || || Sbjct 1615625 TGATGGCCAGAGCATCGAGCCTGAATTCTACCTGCCCACCGTCCCCATGGTGCTCGTCAA 1615566 Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402 ||||| || || ||||| || || Sbjct 1615565 TGGTGCCGACGGTATCGGTACCGG 1615542 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATT 31269 |||||||| |||||||||||||||||| || ||| || || ||||||| || ||| || Sbjct 1616761 AAGCTCGAAGACGCCAACTGGGCCGGTGGCCGCAACTCCAACCAGTGCACTCTCATTCTT 1616702 Query 31270 ACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTG---TTGTGGGGCGC 31326 || || || ||||| || ||||| ||||| | | || | ||| || || || Sbjct 1616701 ACGGAAGGAGACTCCGCCAAGGCTCTTGCCGTCTCCGGTCTCGGTGCCATTCAAGGTCGT 1616642 Query 31327 AATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGC 31379 | | ||||| || || || || || || |||| | ||||||||||| || Sbjct 1616641 GACACCTTCGGTGTCTTCCCCCTTCGTGGTAAGCTCCTCAACGTTCGTGAGGC 1616589 >seq5 Length=2378914 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| ||||| || ||||| ||||| | Sbjct 2288664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCT 2288723 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| || ||||||||||||||||| ||||| || |||||| Sbjct 2288724 GACACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 2288783 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| |||||||| | || || || | ||||| || Sbjct 2288784 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAAC 2288843 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | ||||| || ||||| Sbjct 2288844 ATCCAGAAGGAGTCGACCCTGCACCTTGTCCTTCGTCTCCGTGGTGG 2288890 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| |||||||| ||||| ||||| Sbjct 2288892 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 2288951 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || |||||||||||||| || ||||| |||||| Sbjct 2288952 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 2289011 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | ||||| || ||||||| || Sbjct 2289012 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCAGACTACAAC 2289071 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || || || || ||| | ||||| || || || || Sbjct 2289072 ATTCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTGCGTGGCGGCCA 2289121 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || || || ||||| ||||| || | ||||| || | ||| Sbjct 2288457 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATTGACAACGTCAAG 2288516 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || |||||||||||||| ||||| || |||||||||||||| ||||| || || Sbjct 2288517 AGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGGC 2288576 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | || ||||| | ||||| || |||| ||||| || ||||| Sbjct 2288577 AAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTC 2288636 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | ||||| |||||||| Sbjct 2288637 CACCTTGTCCTTCGTCTCCGCGGTGG 2288662 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || || || ||||| ||||| || | || | || | ||| Sbjct 2288123 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACTATCGACAACGTCAAG 2288182 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| || || || |||||||||||||| || || || || Sbjct 2288183 TCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 2288242 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | |||||||| | ||||| Sbjct 2288243 AAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTA 2288277 >seq3 Length=3276928 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 2414300 CTTACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAG 2414359 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| || || || ||||||||||| || || || || || Sbjct 2414360 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGC 2414419 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | || ||||| | ||||| || |||| ||||| || || || Sbjct 2414420 AAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 2414479 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | || || || ||||| Sbjct 2414480 CACCTCGTCCTCCGCCTGCGTGGTGG 2414505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310136231440