Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 8e-15 seq2 82.4 5e-11 >seq5 Length=2378914 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | |||| ||||| || |||||| |||||||| || ||||| Sbjct 2289119 GCCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGA 2289060 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| ||||| || || Sbjct 2289059 GAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 2289000 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | ||| ||||| ||| | Sbjct 2288999 GATACCCTCCTTGTCCTGGATC-TTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGA 2288941 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || ||||| || ||||| || || || || || |||||||| Sbjct 2288940 CCTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 >seq2 Length=4282893 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || ||||| || || |||| || || || Sbjct 1078852 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 1078911 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||||||||||| |||| || Sbjct 1078912 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC-TT 1078970 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | ||| || || | ||| || || || || || Sbjct 1078971 CGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 1079030 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || || |||||||| Sbjct 1079031 GAGCGTCTTGACGAAGATCTGCAT 1079054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729458076621