Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq2 100 2e-16 seq3 84.2 2e-11 >seq5 Length=2378914 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | |||||||| || || || ||||| Sbjct 2288892 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 2288951 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || || || || ||||| || Sbjct 2288952 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 2289011 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | || | || || |||||| Sbjct 2289012 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCAGACTACAAC 2289071 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||||||| | || |||| | ||| |||| || ||| Sbjct 2289072 ATTCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTGCGTGGCGGC 2289119 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | ||||| || || || || |||| Sbjct 2288664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCT 2288723 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || ||||| || || || || Sbjct 2288724 GACACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 2288783 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | || ||| | || | ||||| |||||| Sbjct 2288784 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAAC 2288843 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | ||| | || ||||| || Sbjct 2288844 ATCCAGAAGGAGTCGACCCTGCACCTTGTCCTTCGTCTCCGTGGTGGTAT 2288893 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||||||| | || || || || || || |||||||| | ||||| | ||||| Sbjct 2288457 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATTGACAACGTCAAG 2288516 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || || || || ||||| || |||||| | || | ||||||| Sbjct 2288517 AGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGGC 2288576 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | ||| ||||||| |||||||| || ||||||||||| | Sbjct 2288577 AAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTC 2288636 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | ||| | || ||||| || Sbjct 2288637 CACCTTGTCCTTCGTCTCCGCGGTGGTAT 2288665 >seq2 Length=4282893 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || || || || | || Sbjct 1079054 ATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 1078995 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 1078994 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1078935 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | ||| |||| || |||||| Sbjct 1078934 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 1078875 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||||||| Sbjct 1078874 ATCCAGAAGGAGTCGACC 1078857 >seq3 Length=3276928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || || || || ||||| | || ||| | || || | ||||| Sbjct 2414300 CTTACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAG 2414359 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || ||||| || || || || ||||| | || | ||||||| Sbjct 2414360 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGC 2414419 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | ||| |||| || |||||||| || |||||||||||| | Sbjct 2414420 AAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 2414479 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | || |||| ||||| || Sbjct 2414480 CACCTCGTCCTCCGCCTGCGTGGTGGTAT 2414508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918198850240