Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 179 8e-40 seq5 167 5e-36 seq3 165 2e-35 >seq2 Length=4282893 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| | Sbjct 1078827 ACCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1078886 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | ||| || |||||| || Sbjct 1078887 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 1078946 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 1078947 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 1079006 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct 1079007 CTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCATT 1079055 Score = 87.8 bits (96), Expect = 4e-12 Identities = 192/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||| | ||||| | || |||||| ||||| ||||| || | | || ||| ||| Sbjct 1615692 TTGGTGTAGATGTAACGAGCGCTCGCAGCATCCTTACCACCCTGAATACGCGTACCGAAC 1615751 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 || || | ||| ||| ||| | ||||||||||||||| | | ||| || | | Sbjct 1615752 TGTCCGTTGGGGTCGAGCAGGTTAACGTTGTTGCTACCGACAAACTTCTGCGCAAGACCG 1615811 Query 273897 ACGATAGTCCCCTGAAGGGATAC--CTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 || || || | |||| || || || |||||||| || || ||| ||||| | || Sbjct 1615812 ACAATGGT--CATGAACAGAGACTGTTCACCGTGGTGGTATGCAGTGTTTTCGGAAACAT 1615869 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACA 274014 |||| | | |||||| ||||| | || || | | ||| ||||| || | | | | Sbjct 1615870 AACCTCCAAGCTGAGCGACCTTGATCTCCTTCTTGAGGTTACGCTTAAAGCACGCAAAAA 1615929 Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060 ||||| ||||| ||||||| || || ||||||| ||||| Sbjct 1615930 GAACCTTGCGCTGACCAGGCTTGAGACCGTCGGCGACCGAGGGAAT 1615975 >seq5 Length=2378914 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | || || || || ||||||||||| | Sbjct 2289118 CCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAG 2289059 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 2289058 AGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 2288999 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | || || ||||| || | ||||| Sbjct 2288998 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACC 2288939 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| || ||||| ||||| ||||| |||||||| Sbjct 2288938 TCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || || |||||||||||||| | Sbjct 2288891 ACCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2288832 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||||||||||| || || |||||| || Sbjct 2288831 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGG 2288772 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| || ||| ||||| || ||| | ||||| ||||| || | |||| Sbjct 2288771 AATGCCCTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGA 2288713 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || ||||| || || | ||||| ||||| |||||||| Sbjct 2288712 CCTCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 138 bits (152), Expect = 2e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | || || || |||||||||||||| | Sbjct 2288663 ACCACCGCGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 2288604 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| || || | ||| || ||||| || Sbjct 2288603 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGG 2288544 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| |||||| ||||| || ||| | || || ||||| || | |||| Sbjct 2288543 AATACCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCAATGGTGTCGGACGACTCGA 2288485 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| ||||| || || Sbjct 2288484 CCTCGAGGGTGATGGTCTTGCCGGT 2288460 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| || ||||| ||||| || || || ||||| ||||| | ||| || | Sbjct 2288279 TGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 2288220 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || || ||||||||||| |||||||| | || ||| | ||||||||||||| Sbjct 2288219 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTGTCCG 2288160 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | ||||| ||||| ||||| ||||| || || Sbjct 2288159 AGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2288126 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 230178 GTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAA 230236 || || | ||| |||||||| | |||||| | || || || || || |||||||| Sbjct 2242503 GTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCG-CTCATTGGCATGAA 2242561 Query 230237 TGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG 230296 || | |||||| | || || || || || || || || ||| | |||| || || || Sbjct 2242562 CGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGG 2242621 Query 230297 GTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCA 230356 |||| || |||| |||| |||||||||| ||||||||| | || || || || Sbjct 2242622 CAACGACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCA 2242681 Query 230357 GGGGAAAACTAACTTCTTCGAAAAGCGTGTC 230387 ||| || | ||||||||||| ||||||| Sbjct 2242682 GGGCAAGGCCAACTTCTTCGAGTCGCGTGTC 2242712 >seq3 Length=3276928 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| | Sbjct 2414506 ACCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 2414447 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | || || |||||| || Sbjct 2414446 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGG 2414387 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||||| || || Sbjct 2414386 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 2414327 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||||||||||||||| Sbjct 2414326 CTCGAGGGTGATCGTCTTACCCGT 2414303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738703780198