Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq2 125 5e-24 seq3 93.3 3e-14 >seq5 Length=2378914 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 2288872 ACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 2288813 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| |||||||| || | || | || ||||| ||| Sbjct 2288812 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 2288753 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || ||||||| |||||| ||||| Sbjct 2288752 ATCTTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTCTTG 2288693 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 2288692 CCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||| || |||||||| || | ||| || |||| || Sbjct 2289100 ACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCCTCG 2289041 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 2289040 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 2288981 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||||| || || ||||| | ||||||||||| Sbjct 2288980 ATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTG 2288921 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| |||||||| ||||| Sbjct 2288920 CCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 98.7 bits (108), Expect = 7e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| |||| || Sbjct 2288644 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 2288585 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | ||||||||| || | || | ||| ||||| ||| Sbjct 2288584 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGG 2288525 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || || ||||| | || || ||||| Sbjct 2288524 ATCTTGCTCTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 2288465 Query 44309 CCCGTGAGG 44317 || |||||| Sbjct 2288464 CCGGTGAGG 2288456 >seq2 Length=4282893 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | || ||| |||| || Sbjct 1078846 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 1078905 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||| || | || | || ||||| ||| Sbjct 1078906 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1078965 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||| | ||| || ||||| | || || ||||| Sbjct 1078966 ATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 1079025 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| |||||||| ||||| Sbjct 1079026 CCCGTGAGCGTCTTGACGAAGATCTGCAT 1079054 >seq3 Length=3276928 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | || ||| |||| || Sbjct 2414487 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 2414428 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| || | || | || ||||| ||| Sbjct 2414427 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 2414368 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||| | || |||||||| Sbjct 2414367 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTA 2414308 Query 44309 CCCGTGAGG 44317 ||||| ||| Sbjct 2414307 CCCGTAAGG 2414299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990237666829