Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 165 8e-36 seq2 138 1e-27 seq3 127 2e-24 >seq5 Length=2378914 Score = 165 bits (182), Expect = 8e-36 Identities = 177/229 (77%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || ||||||||| ||||| ||||||||| Sbjct 2288890 CCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2288831 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||||||||| || ||||||||||| ||||| | |||| Sbjct 2288830 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 2288771 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | ||||| | ||| | | | ||||| |||||| | Sbjct 2288770 ATGCCCTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGA 2288713 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| || || || || || || ||||| ||||| |||||||| Sbjct 2288712 CCTCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || || ||||||||||||||| ||||| || Sbjct 2289119 GCCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGA 2289060 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| |||||||||||||||||||| ||||||||||| ||||| | || Sbjct 2289059 GAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 2289000 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| ||| | | | |||||| |||||| | Sbjct 2288999 GATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCAATGGTGTCGGACGACTCGA 2288941 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || |||| ||||| ||||| |||||||| Sbjct 2288940 CCTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 2288662 CCACCGCGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2288603 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||||||||| || || ||||| ||||| | |||| Sbjct 2288602 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 2288543 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 2288542 ATACCCTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCAATGGTGTCGGACGACTCGAC 2288484 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAG 41841 ||| | || || || || || || || Sbjct 2288483 CTCGAGGGTGATGGTCTTGCCGGTGAG 2288457 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 |||||||| ||||| || |||| |||||||||||||||||||| || || ||||| ||| Sbjct 2288277 TAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 2288218 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || | ||| | || |||||||||| ||| || Sbjct 2288217 TCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 2288186 >seq2 Length=4282893 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||| Sbjct 1078863 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1078922 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | ||| | || |||||||||| ||| || ||| ||| Sbjct 1078923 GATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGT 1078981 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||| ||||| | || || || || ||||| |||||||| | Sbjct 1078982 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGA 1079041 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 1079042 CGAAGATCTGCAT 1079054 >seq3 Length=3276928 Score = 127 bits (140), Expect = 2e-24 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||| Sbjct 2414470 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2414411 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||| ||||| | ||| | || |||||||||| ||| || ||| ||| Sbjct 2414410 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGT 2414352 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | | | ||||| ||||||||||| | || ||||| |||||||| || Sbjct 2414351 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGTAAG 2414300 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 85803 ATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATC 85862 || || || ||||| |||||||| ||||||| |||||| ||| ||||| ||||| Sbjct 1910606 ATAGCGCCCCGTTCGGGCCTCGCGGCCAAGCACTCGATCGACACGGGTGCCGGCGTCATT 1910547 Query 85863 GACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAAGAGGA 85918 ||||||||||||||||| | |||||| || | || |||||| | ||||| |||| Sbjct 1910546 GACGCCGACTACCGCGGCACCGTCATGGTCCTGCTGTTCAACTATGGCGAGCAGGA 1910491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303786184400