Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 7e-19
seq4 89.7 6e-13
>seq6
Length=1958011
Score = 109 bits (120), Expect = 7e-19
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183
|||||| || || || || ||| ||| ||||||||||| | ||| | ||||| |
Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415
Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243
| || ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||| || |
Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475
Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 24283
| || ||||| || || || || || ||||| ||||| ||
Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAG 63515
>seq4
Length=2551142
Score = 89.7 bits (98), Expect = 6e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
||| || ||||| || ||| ||| | |||||||| | || | ||||||||||
Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246
|||| || ||| |||| || || ||||| || ||||| || |||| |||||| || || |
Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492
Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 24283
| ||||| || || || || |||||| ||||| ||
Sbjct 1013493 AGAAGAAGATGCCCTCGACGCACGCAAACGCAATCAG 1013529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721340246800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |