Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq6 95.1 1e-14 >seq1 Length=6947394 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | || |||||||| || ||||| ||||||| Sbjct 6691141 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 6691082 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 6691081 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 6691022 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || || ||| Sbjct 6691021 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 6690962 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || | || ||||| || || ||||||||| Sbjct 6690961 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATTTTG 6690911 >seq6 Length=1958011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | ||| |||||||| || ||||| ||||||| Sbjct 41669 CCTCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 41728 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || |||| || | ||||||||| || Sbjct 41729 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 41788 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| || || | ||| Sbjct 41789 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAACC 41848 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||||||||| || || ||||| || || ||||| Sbjct 41849 TCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 41895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | ||||| || ||||||| ||||| ||||| Sbjct 41927 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 41986 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| ||| | ||| |||||||| ||||| || Sbjct 41987 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 42046 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| || | ||| |||||||||||||| | || Sbjct 42047 ACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 42106 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 42107 TTGACGAAGATCTGCAT 42123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || ||||||| ||||| ||||| Sbjct 42155 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 42214 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 42215 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 42274 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | | | || || || ||| || | ||| |||||||||||||| Sbjct 42275 ACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 42327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| |||||||| || ||||| ||||| | || || || ||||||| ||||| ||||| Sbjct 41470 AGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCC 41529 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | ||||||||| || | || |||||||| |||||| || Sbjct 41530 GGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTT 41589 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| || || | ||| || | ||||| ||||||||||| | ||| Sbjct 41590 AACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGT 41649 Query 21158 TTTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 41650 CTTCACAAAGATCTGCAT 41667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259019880060