Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 257 2e-63
seq1 167 2e-36
seq4 140 3e-28
seq9 109 6e-19
seq3 87.8 2e-12
>seq6
Length=1958011
Score = 257 bits (284), Expect = 2e-63
Identities = 400/568 (70%), Gaps = 14/568 (2%)
Strand=Plus/Minus
Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGC----- 116923
|| ||||||| | |||||||| | ||| || |||||||||||||||| | |||
Sbjct 63687 CAGGGAGAACATCCACTCGGAGACGTACTCACTCCTCATCGACACGTACATTCGCGACAA 63628
Query 116924 TCTTCGGAGGA-GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982
| || | | | | ||| || |||||||| |||| || |||||| |||| |
Sbjct 63627 TGCCCGCCGCACGTACCTC------TTCAACGCCATTGAGAACATTCCGTGCATCAAGAA 63574
Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC-GAGCGCC 117041
||||||||| |||||||||||||||||| | | | |||| | | | | || ||||| |
Sbjct 63573 GAAGGCCGACTGGGCGCTGCGCTGGATCTCGGAC-GAGAAGTCTTCGTTTGCTGAGCGTC 63515
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|| | || || || |||||||||||| ||||||| |||||| || ||| |||| || |
Sbjct 63514 TGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCT 63455
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| ||||||||||||||||| || || ||| ||||||||||| || | |
Sbjct 63454 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCG 63395
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||||| || |||||||||||| ||||||| | ||| | | || |||
Sbjct 63394 ACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGCCGCCGCCCGC 63335
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
| | | | | || | |||| ||| || || ||| || |||||| |||||||
Sbjct 63334 ACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCA 63275
Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341
|||| ||||| || || ||| | || | || || | |||| || ||||| |
Sbjct 63274 CCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATTG 63215
Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401
|||| ||||||||| | ||||| ||| || | | || ||| ||| || || |||
Sbjct 63214 AGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGACGTACTACTCGACCA 63155
Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC 117429
|||| | ||||||||| | | |||||
Sbjct 63154 ACCCCTTCGACTTTATGGAGATGATCTC 63127
Score = 156 bits (172), Expect = 4e-33
Identities = 162/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| | ||
Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| |||||||| ||| | |||||
Sbjct 42063 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 42005
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| || ||||| |||||||||
Sbjct 42004 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAA 41945
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| |||| || || || ||
Sbjct 41944 CATCCAGAAGGAGTCCACCCTTCACCTCGT 41915
Score = 140 bits (154), Expect = 3e-28
Identities = 146/189 (77%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769
||||| ||||| ||||||||| |||| ||||| || | |||| | | | |||| ||||
Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAA 42272
Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829
| || || | ||||| |||||||| ||| | |||||||| || ||||||| ||| ||
Sbjct 42271 GTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 42212
Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889
||| ||||| || |||| || ||||| |||||||||||||||||||||| |||| ||
Sbjct 42211 CAAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT 42152
Query 40890 GCATCTAGT 40898
|| || ||
Sbjct 42151 TCACCTCGT 42143
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || ||||| || ||||| || || || |||| ||||| | ||
Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || || | ||||| ||||| ||||| | |||||
Sbjct 41607 GACACGATCGACAACGTT-AAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41549
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||| ||||| ||||| || |||| ||||| ||| |||||||||
Sbjct 41548 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 41489
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 41488 CATCCAGAAGGAGTCGACTCTCCACCTTGT 41459
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || ||||| |||| || || | |
Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || || | ||||| ||||| ||||| | |||||
Sbjct 41835 GACACGATCGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41777
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||| ||||| ||||| || || | ||||| ||| ||||||||
Sbjct 41776 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAA 41717
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 41716 CATCCAGAAGGAGTCGACTCTCCACCTCGT 41687
>seq1
Length=6947394
Score = 167 bits (184), Expect = 2e-36
Identities = 177/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| || || ||||||||||| ||||||||| |||| ||||| ||
Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971
Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | |||| |||||| || || | ||||| |||||||||||| | ||
Sbjct 6690972 TCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 6691030
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || ||||||| ||| ||||| ||||| || |||| |||||||| |||||
Sbjct 6691031 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 6691090
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| | || || || || || | ||| || | || ||
Sbjct 6691091 CAACATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 6691141
>seq4
Length=2551142
Score = 140 bits (154), Expect = 3e-28
Identities = 127/160 (79%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097
|||||| | || || ||| |||||||||| ||||||| |||||| || || |||||
Sbjct 1013532 CGCCTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATC 1013473
Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157
|| ||||||||||| ||||| ||||||| ||||||||| || |||||||||||||||
Sbjct 1013472 TTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCG 1013413
Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197
| |||||||| |||| ||||||||| || ||||||
Sbjct 1013412 CGCGACGAGGGCATGCACACCGACTTTGCATGCCTGCTGT 1013373
Score = 120 bits (132), Expect = 3e-22
Identities = 201/284 (71%), Gaps = 9/284 (3%)
Strand=Plus/Minus
Query 116661 AGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG---G 116717
||||| |||||||| | ||||||| | ||||| | | ||| | ||||||| |
Sbjct 1013961 AGGCGAGCTTCTGGACGGCCGAGGAGCTCGACCTCGCGACCGACCTGCACGACTGGAACG 1013902
Query 116718 AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCA 116777
||||||||||||| |||||||| |||||| || | | ||||| || ||||| |
Sbjct 1013901 AGCGCTTGAACGAGAACGAGCGGTTCTTCATCCTGCGCATCCTGGCGTTCTTCGCGTCGT 1013842
Query 116778 GCGACGGCATCGTCAACGAGAATCTGGTCGAGC-GTTT-CGCTCAGGAGGTGCAGGTGGC 116835
||||||||||| ||| || || || || |||| ||||| ||||||||||| ||
Sbjct 1013841 CGGACGGCATCGTTGGCGAAAACCTCATCTCGCAGTTTGCGCTC--GAGGTGCAGGTCGC 1013784
Query 116836 CGAGGCGCGGTGC-TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
|||||||| ||| ||||||| || |||| || ||| | |||||| | || | ||
Sbjct 1013783 TGAGGCGCG-TGCGTTCTACGCGTTCCAGACGATGATCGAGCAGGTGCACGCCGAGACGT 1013725
Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAG 116938
| ||| ||||| ||||| |||| ||||||||||||
Sbjct 1013724 ACAGCCTCCTGATCGAGACGTATGTGCAGGACTCGGAGGAGAAG 1013681
>seq9
Length=1289175
Score = 109 bits (120), Expect = 6e-19
Identities = 126/167 (75%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760
|| || || ||||| ||||| ||||||||| |||| ||||| | | |||| | |
Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| |||||| || || | ||||| |||||||||||| | |||||||| || |||||
Sbjct 761657 AACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCAT 761715
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|| ||| ||||| ||||| || |||| |||||||| |||||||
Sbjct 761716 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 761762
>seq3
Length=3222897
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 139378 GCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCCGGCGA 139437
||||||||||||||| |||||||| || ||| ||||| ||||| |||||||||
Sbjct 747513 GCACGGCTTCCACGTCCACGAGTTTGGTGACCTCTCGAACGGCTGCACCTCGGCCGGCCC 747572
Query 139438 GCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACGTCGG 139497
||||||||||| ||||||||| || || |||||| || || | ||||| ||
Sbjct 747573 CCACTTCAACCCGTACAAGAAGGACCACGGTGCCCCGGACGCCAAGGTCCGCCACGTTGG 747632
Query 139498 CGACCTGGGCA 139508
||||| ||||
Sbjct 747633 AGACCTCGGCA 747643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218974591600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |