Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 257 2e-63 seq1 167 2e-36 seq4 140 3e-28 seq9 109 6e-19 seq3 87.8 2e-12 >seq6 Length=1958011 Score = 257 bits (284), Expect = 2e-63 Identities = 400/568 (70%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGC----- 116923 || ||||||| | |||||||| | ||| || |||||||||||||||| | ||| Sbjct 63687 CAGGGAGAACATCCACTCGGAGACGTACTCACTCCTCATCGACACGTACATTCGCGACAA 63628 Query 116924 TCTTCGGAGGA-GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 | || | | | | ||| || |||||||| |||| || |||||| |||| | Sbjct 63627 TGCCCGCCGCACGTACCTC------TTCAACGCCATTGAGAACATTCCGTGCATCAAGAA 63574 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC-GAGCGCC 117041 ||||||||| |||||||||||||||||| | | | |||| | | | | || ||||| | Sbjct 63573 GAAGGCCGACTGGGCGCTGCGCTGGATCTCGGAC-GAGAAGTCTTCGTTTGCTGAGCGTC 63515 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | || || || |||||||||||| ||||||| |||||| || ||| |||| || | Sbjct 63514 TGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCT 63455 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| ||||||||||||||||| || || ||| ||||||||||| || | | Sbjct 63454 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCG 63395 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || |||||||||||| ||||||| | ||| | | || ||| Sbjct 63394 ACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGCCGCCGCCCGC 63335 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | | | | | || | |||| ||| || || ||| || |||||| ||||||| Sbjct 63334 ACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCA 63275 Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 |||| ||||| || || ||| | || | || || | |||| || ||||| | Sbjct 63274 CCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATTG 63215 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 |||| ||||||||| | ||||| ||| || | | || ||| ||| || || ||| Sbjct 63214 AGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGACGTACTACTCGACCA 63155 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC 117429 |||| | ||||||||| | | ||||| Sbjct 63154 ACCCCTTCGACTTTATGGAGATGATCTC 63127 Score = 156 bits (172), Expect = 4e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| | || Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| |||||||| ||| | ||||| Sbjct 42063 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 42005 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| || ||||| ||||||||| Sbjct 42004 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAA 41945 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 41944 CATCCAGAAGGAGTCCACCCTTCACCTCGT 41915 Score = 140 bits (154), Expect = 3e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| ||||||||| |||| ||||| || | |||| | | | |||| |||| Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAA 42272 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| |||||||| ||| | |||||||| || ||||||| ||| || Sbjct 42271 GTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 42212 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| || ||||| |||||||||||||||||||||| |||| || Sbjct 42211 CAAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT 42152 Query 40890 GCATCTAGT 40898 || || || Sbjct 42151 TCACCTCGT 42143 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || || || |||| ||||| | || Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 41607 GACACGATCGACAACGTT-AAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41549 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 41548 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 41489 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 41488 CATCCAGAAGGAGTCGACTCTCCACCTTGT 41459 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| |||| || || | | Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 41835 GACACGATCGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 41777 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 41776 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAA 41717 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 41716 CATCCAGAAGGAGTCGACTCTCCACCTCGT 41687 >seq1 Length=6947394 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || ||||||||||| ||||||||| |||| ||||| || Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| |||||| || || | ||||| |||||||||||| | || Sbjct 6690972 TCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 6691030 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| ||||| ||||| || |||| |||||||| ||||| Sbjct 6691031 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 6691090 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || || || || || | ||| || | || || Sbjct 6691091 CAACATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 6691141 >seq4 Length=2551142 Score = 140 bits (154), Expect = 3e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 |||||| | || || ||| |||||||||| ||||||| |||||| || || ||||| Sbjct 1013532 CGCCTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATC 1013473 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| ||||| ||||||| ||||||||| || ||||||||||||||| Sbjct 1013472 TTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCG 1013413 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 | |||||||| |||| ||||||||| || |||||| Sbjct 1013412 CGCGACGAGGGCATGCACACCGACTTTGCATGCCTGCTGT 1013373 Score = 120 bits (132), Expect = 3e-22 Identities = 201/284 (71%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 116661 AGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG---G 116717 ||||| |||||||| | ||||||| | ||||| | | ||| | ||||||| | Sbjct 1013961 AGGCGAGCTTCTGGACGGCCGAGGAGCTCGACCTCGCGACCGACCTGCACGACTGGAACG 1013902 Query 116718 AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCA 116777 ||||||||||||| |||||||| |||||| || | | ||||| || ||||| | Sbjct 1013901 AGCGCTTGAACGAGAACGAGCGGTTCTTCATCCTGCGCATCCTGGCGTTCTTCGCGTCGT 1013842 Query 116778 GCGACGGCATCGTCAACGAGAATCTGGTCGAGC-GTTT-CGCTCAGGAGGTGCAGGTGGC 116835 ||||||||||| ||| || || || || |||| ||||| ||||||||||| || Sbjct 1013841 CGGACGGCATCGTTGGCGAAAACCTCATCTCGCAGTTTGCGCTC--GAGGTGCAGGTCGC 1013784 Query 116836 CGAGGCGCGGTGC-TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 |||||||| ||| ||||||| || |||| || ||| | |||||| | || | || Sbjct 1013783 TGAGGCGCG-TGCGTTCTACGCGTTCCAGACGATGATCGAGCAGGTGCACGCCGAGACGT 1013725 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAG 116938 | ||| ||||| ||||| |||| |||||||||||| Sbjct 1013724 ACAGCCTCCTGATCGAGACGTATGTGCAGGACTCGGAGGAGAAG 1013681 >seq9 Length=1289175 Score = 109 bits (120), Expect = 6e-19 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || ||||| ||||| ||||||||| |||| ||||| | | |||| | | Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 761657 AACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCAT 761715 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 || ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 761716 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 761762 >seq3 Length=3222897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 139378 GCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCCGGCGA 139437 ||||||||||||||| |||||||| || ||| ||||| ||||| ||||||||| Sbjct 747513 GCACGGCTTCCACGTCCACGAGTTTGGTGACCTCTCGAACGGCTGCACCTCGGCCGGCCC 747572 Query 139438 GCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACGTCGG 139497 ||||||||||| ||||||||| || || |||||| || || | ||||| || Sbjct 747573 CCACTTCAACCCGTACAAGAAGGACCACGGTGCCCCGGACGCCAAGGTCCGCCACGTTGG 747632 Query 139498 CGACCTGGGCA 139508 ||||| |||| Sbjct 747633 AGACCTCGGCA 747643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218974591600