Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq1 120 3e-22 seq9 96.9 3e-15 >seq6 Length=1958011 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 41464 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTG 41523 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || || |||||||| |||||||| || ||||||||||| || || Sbjct 41524 CTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTT 41583 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | |||| ||||| | ||||||||||| || | ||| |||||||| Sbjct 41584 GCTCTTAACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGT 41643 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| ||||||||| || Sbjct 41644 AAGCGTCTTCACAAAGATCTGCATGCCT 41671 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | | || | ||| | || ||||| || || |||||||| ||| Sbjct 41895 TACCTCCGCGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 41954 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||||||||| || || ||| ||||||| |||||||| ||||| | Sbjct 41955 AAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGG 42014 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| ||| || || || | |||| |||||| | ||||| Sbjct 42015 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGA 42074 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || |||||||| || || || || || |||||||| Sbjct 42075 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | | || | ||| | || ||||| || || |||||||| ||| Sbjct 42123 TACCTCCGCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 42182 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||||||||| || || ||| |||||||||||||||| ||||| | Sbjct 42183 ACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGG 42242 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | || | |||||||| | ||||| Sbjct 42243 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGA 42302 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAG 118717 |||||| ||| | || |||||||| || Sbjct 42303 CCTCGAGGGTGATGGTCTTGCCGGTGAG 42330 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| |||||||||||| Sbjct 41692 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTG 41751 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || || |||||||| |||||||| || ||||||||||| || || Sbjct 41752 CTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTT 41811 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| ||| ||||||| || | ||| |||||||| Sbjct 41812 GCTCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGT 41871 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||| || || || |||||||| Sbjct 41872 CAAAGTCTTGACGAAGATCTGCAT 41895 >seq1 Length=6947394 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 6691118 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 6691059 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| ||||||| |||||||| ||||| || |||||||||||||| || || Sbjct 6691058 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 6690999 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| | ||||||||||| ||| | || ||||| || Sbjct 6690998 GGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 6690939 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 6690938 GAGGGTCTTGACGAAGATCTGCAT 6690915 >seq9 Length=1289175 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||||||||||||||| || || || |||||||||||| Sbjct 761739 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 761680 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| ||||||| ||||||||||| ||| | Sbjct 761679 TCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATG 761620 Query 118704 GTTTTGCCGGTCAGAGTTTTTAC 118726 || |||||||| || || || || Sbjct 761619 GTCTTGCCGGTGAGGGTCTTGAC 761597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830214944220