Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq6 116 4e-21 seq9 91.5 2e-13 >seq1 Length=6947394 Score = 125 bits (138), Expect = 8e-24 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 6691106 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 6691047 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 6691046 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 6690988 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 6690987 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 6690928 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| |||||||| Sbjct 6690927 CGAAGATCTGCATTTT 6690912 >seq6 Length=1958011 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 41476 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 41535 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | | |||||||||| || | || | | | ||| Sbjct 41536 AATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TGGATCTTGCTCTTAACGT 41594 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| ||| || || ||||| || |||||||| | Sbjct 41595 TGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCTTCA 41654 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 41655 CAAAGATCTGCAT 41667 Score = 114 bits (126), Expect = 1e-20 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 41932 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 41991 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||||| || | || |||||||||| ||| | || | |||| || Sbjct 41992 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 42049 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||||| ||| || || || | |||||||| ||||| || || ||||| Sbjct 42050 TTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 42109 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 42110 ACGAAGATCTGCAT 42123 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 41704 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 41763 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | | |||||||||| ||| || || | ||| Sbjct 41764 AATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 41822 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || |||| |||||| || ||||| || | ||||| | Sbjct 41823 TGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGA 41882 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 41883 CGAAGATCTGCAT 41895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||| || || |||| || |||||||| || ||||| Sbjct 42160 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 42219 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 42220 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 42278 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | ||||| || || || |||| |||||||| ||||| || || Sbjct 42279 TGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 42330 >seq9 Length=1289175 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 761762 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 761703 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||| | || | || |||||||||| ||| || |||| ||| | | | |||||| Sbjct 761702 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCC 761644 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 ||| || || |||| |||||||| ||||| || || ||||| || Sbjct 761643 GACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 761597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817349829800