Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 2e-29
seq1 125 5e-24
seq9 96.9 2e-15
>seq6
Length=1958011
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || || ||||| | ||| || ||||| ||||||||||||||
Sbjct 41441 CCGCCACGGAGTCGAAGAACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 41500
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| |||| || | ||||||||| |||||||| || |||||||||||| ||
Sbjct 41501 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 41560
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | |||| |||| ||| |||||
Sbjct 41561 ATACCCTCCTTGTCCTGGATCTTGCTCTTAACGTTGTCGATCGTGTCGGACGACTCGACC 41620
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||| || || |||||||| || || |||||||||||||||||
Sbjct 41621 TCGAGCGTAATCGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 41667
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || ||||| | || || ||||| ||||||||||||||
Sbjct 41897 CCTCCGCGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 41956
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| |||| |||| || | ||||||||| ||||| ||||| |||||||||||| |||
Sbjct 41957 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 42016
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | || | |||| ||| |||||
Sbjct 42017 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACC 42076
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||||||||| || || || |||||||||||
Sbjct 42077 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || || ||||| | ||| || ||||| ||||||||||| ||
Sbjct 41669 CCTCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 41728
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || || | ||||||||| |||||||| || |||||||||||| ||
Sbjct 41729 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 41788
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | |||| || | ||| || ||
Sbjct 41789 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAACC 41848
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||| || |||||||| | ||| || || |||||||||||
Sbjct 41849 TCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 41895
Score = 120 bits (132), Expect = 2e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || ||||| | || || ||||| |||||||||||||||
Sbjct 42125 CCTCCGCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 42184
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| |||| |||| || | ||||||||| ||||| ||||| |||||||||||| |||
Sbjct 42185 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGA 42244
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | || | || | || |||||
Sbjct 42245 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 42304
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368
|| | |||||||| |||||||||||
Sbjct 42305 TCGAGGGTGATGGTCTTGCCGGTGAG 42330
>seq1
Length=6947394
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || || ||||| | || || ||||| ||||||||||| ||
Sbjct 6691141 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 6691082
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| ||||| ||||| |||||||||||| |||
Sbjct 6691081 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 6691022
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | |||| || | || |||||
Sbjct 6691021 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 6690962
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||| ||||| || || || |||||||||||
Sbjct 6690961 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6690915
>seq9
Length=1289175
Score = 96.9 bits (106), Expect = 2e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271
||||||| || || ||| |||| || | ||||||||| ||||| ||||| |||||||
Sbjct 761762 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 761703
Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331
|||| ||| | || ||||||||| ||||| ||| | | | | |||| || |
Sbjct 761702 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCG 761643
Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
||| ||||| || | |||||||| ||||||||||| || || ||
Sbjct 761642 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 761597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071862189600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |