Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 251 2e-61 seq2 95.1 3e-14 >seq1 Length=6947394 Score = 251 bits (278), Expect = 2e-61 Identities = 614/916 (67%), Gaps = 26/916 (3%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||| || || ||| ||||| |||||| || || |||||| ||| || Sbjct 1522986 CTTTGGCTTCAAGACCCTTGAGCGCTCGTACCTCCTCCGCATCGACGGCAAGGTCGCCGA 1522927 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || ||||||||| | ||||| ||| | |||| || ||| || |||| || | Sbjct 1522926 GCGTCCCCAGCACATGATCATGCGCGTGTCGATCGGTATCCACGGCGACAACATTGACAA 1522867 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 || | ||||| |||| | ||| || |||| | || || ||| | || || || Sbjct 1522866 GGTCATTGAGACTTACAACCTCATGTCGGAGCGCTACTTCACCCACGCCTCGCCTACCCT 1522807 Query 249006 CTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGA 249065 ||||||||| |||||| |||| ||| || |||||||| ||| | |||||| | || Sbjct 1522806 CTTCAACGCTGGTACCCCCAACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGA 1522747 Query 249066 CGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCG 249124 ||||| ||||||| || || ||||| || || || | || |||| || || | Sbjct 1522746 GGACTCGATCGACGGTATCTACGACACCCTCAAGACCTGC-GCCCAGATCTCCAAGACTG 1522688 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | ||||| ||||||||| | || ||||||||| || |||||||||||||| |||| Sbjct 1522687 CCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGGTTCGTACATTGCCGGTA 1522628 Query 249185 CAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGC-TTTGAGTCCACCGCCAGG 249243 | || || | | ||||| || ||| | || || ||| | || | || || | Sbjct 1522627 CCAACGGTTACTCGAACGGTATTGTCCCCATGCTCCG-TGCATACGACGCTACTGCTCGT 1522569 Query 249244 TTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 | | || |||||| || ||||| || | || ||||| || | || Sbjct 1522568 TACGTCGACCAGGGAGGCAACAAGCGCC---CCGGTGCCTTTGCCATCTACCTTGAGCCT 1522512 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 ||||||||||| | || || ||||| ||| | |||||| ||||||| ||| | Sbjct 1522511 TGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 1522452 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | || |||||||||||||||| ||| ||| || ||||| | |||||| || ||| || Sbjct 1522451 CGTGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAG 1522392 Query 249418 GCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGAC-CTCATCGATCTAC 249475 ||||| ||||| ||||| || | | || |||| ||||||| | ||| || || Sbjct 1522391 GCCGATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCAC 1522332 Query 249476 ACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCG---GCAAGA 249532 ||| | || || || ||| |||| ||||| | | |||| | |||||| Sbjct 1522331 TCGGAG--GAGTTTGAGGCTCTCTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGA 1522274 Query 249533 CAATCAAGGCTCGGA--CCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGG 249590 | |||||||||| || | || || | | | ||| |||||| |||||| || || Sbjct 1522273 CCATCAAGGCTCAGAAGCTCTGGTTCTCCA--TCCTTGAGGCCCAGACAGAGACTGGTGG 1522216 Query 249591 GCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTA 249649 || | | || | | ||| ||||| |||| |||| ||||| | ||| || |||| Sbjct 1522215 CCCCT-TCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGGTA 1522157 Query 249650 CCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTG 249709 ||||| ||||| || ||||| | ||| | ||| | ||||| || || ||| ||| Sbjct 1522156 CCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAGGTTG 1522097 Query 249710 CCGTCTGCAACCTGGC 249725 ||||||||||||| || Sbjct 1522096 CCGTCTGCAACCTTGC 1522081 >seq2 Length=4354190 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/252 (68%), Gaps = 21/252 (8%) Strand=Plus/Plus Query 254099 GCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGAT 254158 ||||||||| ||||||||||| || ||||| ||||| | ||||| ||||| ||||| Sbjct 2917607 GCGCGTGCTTGAGCTGAACGCGTCGGACGAGCGCGGCATCACGGTCGTGCGCGAGAAGAT 2917666 Query 254159 CAAGACTTTCTCCAAGATGTCG-------ATTTCGTCGTTCCAACC--CGGC-------- 254201 |||||| || | ||| | | | ||| ||| | | | |||| Sbjct 2917667 CAAGACGTTTGCAAAGGAGACACCGCGCAACGTCGGCGTCTCGAGCGACGGCAAGACGTA 2917726 Query 254202 ----TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGC 254257 || ||||| | |||||| | ||||| |||||||| ||| | |||||| ||||| Sbjct 2917727 CCCGTGCCCGCCGTACAAGCTGATTATCCTCGACGAGGCCGACTCGATGACGCAGGACGC 2917786 Query 254258 GCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGT 254317 |||| ||| || || || | ||||||||| |||| | ||||| || || || || Sbjct 2917787 GCAGAGCGCGCTGCGTCGCATCATGGAGACGTACTCACGCATCACGCGCTTCTGTCTCGT 2917846 Query 254318 GTGCAACTACGT 254329 ||||||||| || Sbjct 2917847 GTGCAACTATGT 2917858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765918482880