Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 2e-23
>seq6
Length=1958011
Score = 123 bits (136), Expect = 2e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| || ||| |||| || || || || ||||||||
Sbjct 41476 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 41535
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| ||||| ||||||||||| | ||||||||||||| || || ||||||
Sbjct 41536 AATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTAACGTT 41595
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| ||| ||||| | |||||||||||||| || || ||||||||
Sbjct 41596 GTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTCTTCAC 41655
Query 45325 AAAGATTTGCATG 45337
|||||| ||||||
Sbjct 41656 AAAGATCTGCATG 41668
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| || ||| | || || || || || ||||||||
Sbjct 41704 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 41763
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| ||||| ||||||||||| | ||||||||||||| || || ||| ||
Sbjct 41764 AATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTT 41823
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | ||||| ||| ||||| | || ||||||||||| |||| |||||| ||
Sbjct 41824 GTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGAC 41883
Query 45325 AAAGATTTGCAT 45336
||||| |||||
Sbjct 41884 GAAGATCTGCAT 41895
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| || || |||| || || ||
Sbjct 41920 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTG 41979
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| || | ||||| |||||||| || | |||||||||||| ||| ||
Sbjct 41980 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 42039
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| ||| ||||| | ||| || |||||||| ||
Sbjct 42040 CGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 42099
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || ||||| |||||
Sbjct 42100 GAGGGTCTTGACGAAGATCTGCAT 42123
Score = 82.4 bits (90), Expect = 6e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| ||| || |||| || || ||
Sbjct 42148 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTG 42207
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| || | ||||| |||||||| || | |||||||||||| || ||
Sbjct 42208 CTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 42267
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| ||| ||||| | ||| || |||||||| ||
Sbjct 42268 GGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 42327
Query 45313 CAG 45315
||
Sbjct 42328 GAG 42330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075031475735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |