Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 288 9e-73 seq6 185 8e-42 seq4 125 6e-24 seq9 89.7 5e-13 >seq1 Length=6947394 Score = 288 bits (318), Expect = 9e-73 Identities = 637/947 (67%), Gaps = 14/947 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 |||||||||||||| ||||| ||||| |||||||| || | |||||| | || || Sbjct 1522072 GCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCA 1522131 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGCA 23139 || || || ||| |||| || || |||| | ||| |||||| || || ||| Sbjct 1522132 GTGCAGAGGTTGGACGACTTGATGGTACCCAGGT-GCTGCTGGTTCGACTTGCGGTTGGC 1522190 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | ||||||||||||||| | || || ||||| ||| | ||| | ||| | Sbjct 1522191 GGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAA 1522250 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGT 23258 ||| | ||||||| | | ||| || ||| ||| || ||||||||| | || Sbjct 1522251 CCAGAGCTTCTGAGCCTTGATG-GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGT 1522309 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACA 23316 | | || ||||| || | || ||| | || ||||| | | ||| || || Sbjct 1522310 AGAGAGCCTCAAACTCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCA--GGGCA 1522367 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 |||||| |||| || || || || |||| || || || || ||||| || Sbjct 1522368 CATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAG 1522427 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||| || || || || || |||||||| |||||| |||||| | || | Sbjct 1522428 GGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAG 1522487 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||||| || ||||| || ||||| ||||| ||||| | |||||| || || || | ||| Sbjct 1522488 GAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTT 1522547 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 ||||| ||||| ||||||||||| || || || ||| | | ||||| || || | Sbjct 1522548 GTTGCCTCCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAAT 1522607 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||||| || ||| || || | |||||| || || || | |||||| | Sbjct 1522608 ACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTGTGGAT 1522667 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||||| ||| || || ||| | | || || ||| ||||| || || |||||||| Sbjct 1522668 GTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTA 1522727 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 ||| || ||||| |||||| || | ||||| | ||| ||||| ||||| || | || Sbjct 1522728 GATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTT 1522787 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 ||| ||| | || ||| || || || |||||| || ||||| | | |||||| || Sbjct 1522788 GGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAG 1522847 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 ||||| || || ||| | ||||||| || ||||| |||||||| | |||||||| Sbjct 1522848 GTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCAT 1522907 Query 23857 CATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACG 23913 ||||||| || || | || ||||| | ||||| || || || || || || Sbjct 1522908 GATCATGTGCTGGGGACGCTCGGCGACCTT---GCCGTCGATGCGGAGGAGGTACGAGCG 1522964 Query 23914 TTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | | || || || ||||| |||| |||| ||||||| || |||| Sbjct 1522965 CTCAAGGGTCTTGAAGCCAAAGTAGTTATAGCTAAAGTCGCGGTCGT 1523011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 6690972 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 6691031 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| | || ||| || | || || Sbjct 6691032 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 6691091 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| || || || || || | ||| | || |||| Sbjct 6691092 AACATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGCCTGCGTGGTGGTA 6691143 >seq6 Length=1958011 Score = 185 bits (204), Expect = 8e-42 Identities = 399/588 (68%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | ||| || || |||||||| |||||| | ||||| | | Sbjct 63683 GAGAACATCCACTCGGAGACGTACTCACTCCTCATCGACACGTACATTCGCGACAATGCC 63624 Query 57867 -GAGAAACGTAGACTGTTCAACGCGATCGA-AACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | ||||| || |||||||| || || |||| | | || ||| |||||||| | Sbjct 63623 CGCCGCACGTAC-CTCTTCAACGCCATTGAGAACATTCCGTGC-ATCAAGAAGAAGGCCG 63566 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 | ||| | | ||||| || | | | |||| || ||| | || || |||| Sbjct 63565 ACTGGGCGCTGCGCTGGATCTCGGACGAGAAGTCTTCGTTTGCTGAGCGTCTGATTGCGT 63506 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 | ||||||||||| || || ||||| |||||| ||||| | || || ||| | |||| Sbjct 63505 TTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGA 63446 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | |||||||| |||||||| || || || |||||| | || |||||||||||||||| Sbjct 63445 AGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGACGAGGGTC 63386 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATC 58164 |||| || || ||||| ||||| ||| | ||| | | ||| | || | Sbjct 63385 TCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGCCGCCGCCCGCACCCCGACC 63326 Query 58165 GCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCC 58224 |||| | | ||||||| ||||| ||| ||| || | ||||| ||||||| || | Sbjct 63325 TCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCGC 63266 Query 58225 TACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTG 58284 | || || | || | || |||||| | | |||| |||||||||||||||| | Sbjct 63265 TCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATTGAGTTTGTCG 63206 Query 58285 CCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTT 58342 ||||| | || | ||| || | |||| | | ||| || ||| || || || Sbjct 63205 CCGACCGTCTGCTCGTCGCCCTCGGCAACGAGA-AGAC-GTACTACTCGACCAACCCCTT 63148 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 || |||||| | ||||||||||| |||||||| | ||||| ||||| Sbjct 63147 CGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGA 63100 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| ||||| || |||| || || |||| Sbjct 41668 CATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTC 41609 Query 31252 CGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| |||| | | | ||| | ||||||||| || | || ||||||| Sbjct 41608 CGACACGATCGACAACGTTAAGAGCAAGA-TCCAGGACAAGGAGGGTATCCCTCCCGACC 41550 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| ||||| ||| | || ||| || | ||| || | Sbjct 41549 AGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACA 41490 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || |||||||| || || || ||| |||| | ||||| Sbjct 41489 ACATCCAGAAGGAGTCGACTCTCCACCTTGTTCTTCGACTCCGTGGCGG 41441 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || || || ||||| Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 42063 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 42004 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | || ||| || | ||| || ||| Sbjct 42003 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAAC 41944 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || ||||| || || || Sbjct 41943 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCT 41912 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| |||||||| |||| ||||| |||| Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || ||| || | | ||||||||| || | || |||||| Sbjct 41835 GACACGATCGACAACGTGAA---GAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGAC 41779 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||| ||||| ||| | || || Sbjct 41778 CAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGA 41741 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| || |||||| |||| || || | || |||| | || | ||||| Sbjct 42330 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 42271 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| ||| | || ||||||||||||||||| || ||||| ||| Sbjct 42270 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 42211 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| || || ||| || ||||| || || || || || ||| Sbjct 42210 AAGCAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTT 42151 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||| | || | || |||| Sbjct 42150 CACCTCGTCCTTCGTCTCCGCGGAGGTA 42123 >seq4 Length=2551142 Score = 125 bits (138), Expect = 6e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || ||||| || |||||| || || ||||| |||||| |||||||| || || Sbjct 1013529 CTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTC 1013470 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||| ||||||||||||| ||||||| | || |||||| Sbjct 1013469 TGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGC 1013410 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||||| | || || || ||||| ||||| ||||| Sbjct 1013409 GACGAGGGCATGCACACCGACTTTGCATGCCTGCTGTAC 1013371 >seq9 Length=1289175 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || ||||| || |||||| |||| || || |||| |||| |||| Sbjct 761597 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 761656 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| || || ||||||||| ||| | || || |||||||||||||| || Sbjct 761657 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 761716 Query 31325 TTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| ||||| ||| | || ||| Sbjct 761717 TTCGCCGGCAAGCAGCTCGAGGAC 761740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766204977200