Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 4e-12 >seq1 Length=6947394 Score = 87.8 bits (96), Expect = 4e-12 Identities = 178/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 94779 GTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTC-CTTAAGAGTATCAT 94837 ||||| |||| || || |||||||||||||| | | ||| ||| || || || | Sbjct 1522668 GTGGAGACCGATACCGCCGGCAGTCTTGGAGATC-TGGGCGCAGGTCTTGAGGGTGTCGT 1522726 Query 94838 AAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTG 94897 | ||||| || || || || | | | | | |||||||||||| || | ||||| Sbjct 1522727 AGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGT 1522786 Query 94898 TGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGA 94957 || || ||| || || || || || || || ||||| || ||| || |||||||| Sbjct 1522787 TGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGA 1522846 Query 94958 GATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCA 95017 | | || || |||||||| | |||| ||||| || |||| | ||| |||| Sbjct 1522847 GGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACACGCGCA 1522906 Query 95018 TAATCATGTCCTGAGGGCGCTC 95039 | ||||||| ||| || ||||| Sbjct 1522907 TGATCATGTGCTGGGGACGCTC 1522928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583556233425