Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 113 6e-20 >seq6 Length=1958011 Score = 113 bits (124), Expect = 6e-20 Identities = 182/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 |||||| || || || || ||| ||| ||||||||||| | ||| | ||||| | Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 | || ||||| |||||||| ||||| ||||| || ||||| || ||||| || || || | Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33750 | || |||||||| || || || || ||||| ||||| || | ||| || ||| | Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534 Query 33751 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | ||| ||||| | ||||| ||||||||||| || | || || || | Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594 Query 33807 TCTATGGCATTAAAGAGATA 33826 || ||||| || ||||| || Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817324454800