Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq4 89.7 7e-13
>seq6
Length=1958011
Score = 118 bits (130), Expect = 1e-21
Identities = 183/260 (70%), Gaps = 5/260 (2%)
Strand=Plus/Plus
Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206
|||||| || || || || ||| ||| ||||||||||| | ||| | ||||| |
Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415
Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266
| || ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||| || |
Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475
Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326
| || ||||| || || || || || ||||| ||||| || | ||| || ||| ||
Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534
Query 36327 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382
| ||| ||||| | ||||| ||||||||||| || | || || || ||
Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594
Query 36383 TCTATAGCATTAAAGAGATA 36402
|| || || || ||||| ||
Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614
>seq4
Length=2551142
Score = 89.7 bits (98), Expect = 7e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209
||| || ||||| || ||| ||| | |||||||| | || | ||||||||||
Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432
Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269
|||| || ||| |||| || || ||||| || ||||| || |||| |||||| || || |
Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492
Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306
| ||||| || || || || |||||| ||||| ||
Sbjct 1013493 AGAAGAAGATGCCCTCGACGCACGCAAACGCAATCAG 1013529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172512049400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |