Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 >seq2 Length=4354190 Score = 129 bits (142), Expect = 5e-25 Identities = 189/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 21237 AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAA 21296 ||||||||||| || || || |||| | ||||| | | ||||||| ||||| ||| Sbjct 191099 AGCTGGTCCACGCCTTGGCCGGTATAGTCGTCGTCGCACGTCTTGTACTCGGCCCCGAAA 191158 Query 21297 TGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCC 21356 || | ||||||||| |||||||| || ||||| ||||||||||| |||| |||| ||||| Sbjct 191159 TGGCGCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCGCGCCGGTGCCCG-AGCCC 191217 Query 21357 TGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG-CCGCGGCGCG 21414 ||| | | | | ||||| ||||| ||||||| || | ||| || |||| | Sbjct 191218 CACGCGGTCGAGGTACTCGCGGCTCCCGTTGCCGTCCCAGATGTGCACGCCCTTGGCG-G 191276 Query 21415 ACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCC 21474 ||| | | | ||| ||| |||| || ||||||||||| |||||| | |||||| | Sbjct 191277 CCAGCGCCGCGCCGTCCGTGTTGCCCGAGACAAACCACAGCAGCTCCTCAATGACGCCGC 191336 Query 21475 TCCAAAACACCCTTTTGGTGGT 21496 | || || | |||||||| Sbjct 191337 GCGTGAAGACGCGCTTGGTGGT 191358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775817526800