Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 2e-15 seq4 87.8 1e-12 >seq3 Length=3222897 Score = 96.9 bits (106), Expect = 2e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 33541 GTCAAGATCAAGCTGCGCAAGATACGCATACCAGAGATGGGCGACAAGTTTGCATCGT-T 33599 ||||||||| | ||| || || || || |||| || ||||||||||| ||| | Sbjct 634058 GTCAAGATCCGTATCCGCTCGACGCGTATCCCGCAGATTGGTGACAAGTTTGCGTCGCGT 633999 Query 33600 CACGGCCCAGAAGGGCACGTGCGGCATGATGTACGACCAGTGGGACATGCCGTTCACGGC 33659 ||||| | ||||||| || || || | |||| |||| ||||||||||||||||| Sbjct 633998 CACGGTC-AGAAGGGTACCATTGGTATCACGTACCGCCAGGAGGACATGCCGTTCACGGG 633940 Query 33660 CGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 ||| ||| | || ||| | ||||||||||||| || | |||||||| ||||| Sbjct 633939 CGAGGGCATCACACCCGACATTATCATCAACCCGCACGCCATTCCCTCGCGTATGAC 633883 >seq4 Length=2551142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || |||||| || || ||| || | || || || || ||||||||||| |||||||| Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTC 1013464 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| || |||||||| || || |||||||||||||| | || || ||||| Sbjct 1013463 AAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGAG 1013404 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGT 22900 || | ||| |||||||| || |||||| Sbjct 1013403 GGCATGCACACCGACTTTGCATGCCTGCTGT 1013373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233448044105