Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 1e-22
seq4 96.9 5e-15
>seq6
Length=1958011
Score = 122 bits (134), Expect = 1e-22
Identities = 184/260 (71%), Gaps = 5/260 (2%)
Strand=Plus/Plus
Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008
|||||| || || || || ||| ||| ||||||||||| | ||| || ||||| |
Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415
Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068
| || ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||| || |
Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475
Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128
| || |||||||| || || || |||||||| |||| || | ||| || ||| |
Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534
Query 50129 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184
| ||| ||||| | ||||| ||||||||||| || | || || || |
Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594
Query 50185 TCTATGGCATTAAAGAGATA 50204
|| ||||| || ||||| ||
Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614
>seq4
Length=2551142
Score = 96.9 bits (106), Expect = 5e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| || ||||| || ||| ||||| |||||||| | || || ||||||||||
Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071
|||| || ||| |||| || || ||||| || ||||| || |||| |||||| || || |
Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492
Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAA 50104
| |||||||| || || || ||||| ||||
Sbjct 1013493 AGAAGAAGATGCCCTCGACGCACGCAAACGCAA 1013525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268485757400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |