Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 206 4e-48 seq1 172 8e-38 seq4 116 5e-21 >seq6 Length=1958011 Score = 206 bits (228), Expect = 4e-48 Identities = 352/506 (70%), Gaps = 21/506 (4%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | |||||||| | |||||| || || |||| |||||||||||| | | Sbjct 63683 GAGAACATCCACTCGGAGACGTACTCACTCCTCATCGACACGTACATTCGCGACAATGCC 63624 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || | || ||||| ||||| || || | | |||| || || ||||| Sbjct 63623 CGCCGCACGTAC---CTCTTCAACGCCATTGAGAACATTCCGTGCATCAAGAAGAAGGCC 63567 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | | || |||||| ||||| |||||||||| || || | ||| | || Sbjct 63566 GACTGGGCGCTGCGCTGGATCTCGGACGAGAAGTCTTCGTTTGCTGAGCGTCTGATTGCG 63507 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || |||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct 63506 TTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAG 63447 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 |||||||| ||||||||||| || || | |||||| | || || || |||||||| Sbjct 63446 AAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGACGAGGGT 63387 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTT-CGCAACT-ATCTGCGTCCCGAGTGCAGAT 125613 || ||| ||||||||| || |||||| |||| || | || |||| | || Sbjct 63386 CTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGCCGCCGCCCGCACCCCGAC 63327 Query 125614 C-CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 | || | || ||| | ||||| || ||||| | ||| || || ||||| Sbjct 63326 CTCATC---GAGAAGATTATCAA---------GGAGGCCGTCAAGATTGAGCAGGAGTTC 63279 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 || ||||| | || || ||| |||||||||||||| | || |||||| ||||| Sbjct 63278 CTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTAC 63219 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACT 125758 || |||||||| || || ||||| || Sbjct 63218 ATTGAGTTTGTCGCCGACCGTCTGCT 63193 >seq1 Length=6947394 Score = 172 bits (190), Expect = 8e-38 Identities = 318/461 (69%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || ||||||||||| ||| Sbjct 1522559 CAGGGAGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCACGCCGAC 1522500 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| |||| | ||||| ||| ||| || |||| || || | ||| Sbjct 1522499 GTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCTCGTGAC 1522440 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || |||||| | || || | ||||||||||| ||| | | || |||| || Sbjct 1522439 CTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCGATGGCGAC 1522380 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| |||||||| | | || |||||||| || || | || |||||| Sbjct 1522379 TGGACCCTCATGTGCCCTGCCGAGTGCCCCGGTCTCTCGGACGTCCACTCGGAGGAGTTT 1522320 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 ||||| ||| | ||||||| |||||| | || |||| | || | || | Sbjct 1522319 GAGGCTCTCTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGCTC- 1522262 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| ||||| | ||| ||| ||||||||| || | ||| |||| Sbjct 1522261 AGAAGCTCTGGTTCTCCATCCTTGAGGCCCAGACAGAGACTGGTGGCCCCTTCATGCTCT 1522202 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| ||| || ||||| ||||| | ||| |||| ||||||||| |||| Sbjct 1522201 ACAAGGACGCCGCCAACCGCAAGTCGAACCAGCAGCACCTGGGTACCATCAAGTCGTCCA 1522142 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||||| || || | |||||| | ||||| |||||| Sbjct 1522141 ACCTCTGCACTGAGATCATTGAGTACTCTTCTCCCGACGAG 1522101 >seq4 Length=2551142 Score = 116 bits (128), Expect = 5e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 1013512 CGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTCAAGAAGCGCGG 1013453 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 ||||||| ||| |||||| |||||| | || || || ||||||||| | ||| Sbjct 1013452 GCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACAC 1013393 Query 125564 TGACTTTGC 125572 |||||||| Sbjct 1013392 CGACTTTGC 1013384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058875786600