Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 3e-13 seq6 89.7 1e-12 >seq1 Length=6947394 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 6691111 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 6691052 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 6691051 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6690992 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 6690991 ACGTTGTCGATCGTGTC-CGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGT 6690933 Query 104542 TTTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 6690932 CTTGACGAAGATCTGCATTTTG 6690911 >seq6 Length=1958011 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 41927 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 41986 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||||||||| | || Sbjct 41987 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 42046 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || || || ||||| || || || || Sbjct 42047 ACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 42106 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 42107 TTGACGAAGATCTGCAT 42123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397883669780