Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq4 93.3 5e-14 >seq6 Length=1958011 Score = 118 bits (130), Expect = 1e-21 Identities = 183/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 |||||| || || || || ||| ||| ||||||||||| | ||| || ||||| | Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 | || ||||| |||||||| ||||| ||||| || ||||| || ||||| || || || | Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33472 | || |||||||| || || || || ||||| ||||| || | ||| || ||| | Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534 Query 33473 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | ||| ||||| | ||||| ||||||||||| || | || || || | Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594 Query 33529 TCTATGGCATTAAAGAGATA 33548 || ||||| || ||||| || Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614 >seq4 Length=2551142 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || ||||| || ||| ||||| |||||||| | || || |||||||||| Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 |||| || ||| |||| || || ||||| || ||||| || |||| || || || || | Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAG 33452 | |||||||| || || || ||| ||||| ||||| || Sbjct 1013493 AGAAGAAGATGCCCTCGAC-GCACGCAAACGCAATCAG 1013529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946927460600