Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq4 93.3 5e-14
>seq6
Length=1958011
Score = 118 bits (130), Expect = 1e-21
Identities = 183/260 (70%), Gaps = 5/260 (2%)
Strand=Plus/Plus
Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352
|||||| || || || || ||| ||| ||||||||||| | ||| || ||||| |
Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415
Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412
| || ||||| |||||||| ||||| ||||| || ||||| || ||||| || || || |
Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475
Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33472
| || |||||||| || || || || ||||| ||||| || | ||| || ||| |
Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534
Query 33473 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528
| ||| ||||| | ||||| ||||||||||| || | || || || |
Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594
Query 33529 TCTATGGCATTAAAGAGATA 33548
|| ||||| || ||||| ||
Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614
>seq4
Length=2551142
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
||| || ||||| || ||| ||||| |||||||| | || || ||||||||||
Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
|||| || ||| |||| || || ||||| || ||||| || |||| || || || || |
Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492
Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAG 33452
| |||||||| || || || ||| ||||| ||||| ||
Sbjct 1013493 AGAAGAAGATGCCCTCGAC-GCACGCAAACGCAATCAG 1013529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946927460600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |