Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 401 2e-106 >seq1 Length=6947394 Score = 401 bits (444), Expect = 2e-106 Identities = 1075/1630 (66%), Gaps = 34/1630 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || | | ||| ||||| || | || || |||||||| || Sbjct 1522829 TTCACCCACGCCTCGCCTACCCTCTTCAACGCTGGTACCCCCAACCCCCAGATGTCGTCG 1522770 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | |||||||| || || ||||| ||||||| ||||| || |||| Sbjct 1522769 TGCTTCCTTGTCGCCATGAAGGAGGACTCGATCGACGGTATCTACGACACCCTCAAGACC 1522710 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || | || ||||||| ||| ||||| || ||| | |||||||| | ||||| Sbjct 1522709 TGCGCCCAGATCTCCAAGACTGCCGGCGGTATCGGTCTCCACATCCACAACATCCGTGCC 1522650 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || |||||| ||| || || |||||||| || | || |||||||| ||| Sbjct 1522649 AAGGGTTCGTACATTGCCGGTACCAACGGTTACTCGAACGGTATTGTCCCCATGCTCCGT 1522590 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 | | ||| |||||| | |||||||||||||| || |||||| || || ||| Sbjct 1522589 GCATACGACGCTACTGCTCGTTACGTCGACCAGGGAGGCAACAAGCGCCCCGGTGCCTTT 1522530 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || |||||| || ||||| | || || || || || ||||| || ||| Sbjct 1522529 GCCATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGACTTCCTCGACCTCCGCAAGAAC 1522470 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| | ||||| ||||| || ||||| || || ||| | | |||| Sbjct 1522469 CACGGCAAGGAGGAGGTTCGTGCTCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTC 1522410 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| || ||||| | | | ||| | ||| | ||||| ||| || || Sbjct 1522409 TTCATGAAGCGTGTCGAGGCCGATGGCGACTGGACCCTCATGTGCCCTGCCGAGTGCCCC 1522350 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| || || || || || | || ||||| ||||| ||||| || ||| Sbjct 1522349 GGTCTCTCGGACGTCCACTCGGAGGAGTTTGAGGCTCTCTACGAGAAGTACGAGCGCGAG 1522290 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || |||| ||| ||||| || || |||||||| ||||| ||||| | || | ||| Sbjct 1522289 GGCAAGGGTCGCAAGACCATCAAGGCTCAGAAGCTCTGGTTCTCCATCCTTGAGGCCCAG 1522230 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 | ||||| || |||| ||| | ||||| || | |||||||||||| |||||| Sbjct 1522229 ACAGAGACTGGTGGCCCCTTCATGCTCTACAAGGACGCCGCCAACCGCAAGTCGAACCAG 1522170 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 |||||||| ||||| || || | |||||| || || ||||| ||||| ||| | || Sbjct 1522169 CAGCACCTGGGTACCATCAAGTCGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCT 1522110 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA---- 364322 ||||||||| |||||| || |||||||| |||||||| || || || ||||| | Sbjct 1522109 CCCGACGAGGTTGCCGTCTGCAACCTTGCCTCGATCGCTCTCCCTGCCTTTGTCGACTTT 1522050 Query 364323 -AG-ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT 364380 || | || | ||| | || | || | || | ||| | | || || Sbjct 1522049 GAGAACAACACCTACGACTTCAAGAAGCTCCACGAGATCACCAAGGTCGTCACCAAGAAC 1521990 Query 364381 CTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATG 364440 |||||| || ||| || || || || | || || ||| || || ||| Sbjct 1521989 CTCGACTGTGTCATCTCGCGCAACTACTACCCCGTCCCCGAGGCCCGCAACTCGAACATG 1521930 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 ||||| ||||| ||||||| ||||| ||||| || || ||| || ||| ||| Sbjct 1521929 CGTCACCGCCCCGTTGGTCTCGGTGTCCAGGGTCTTGCCGACACCTTCATGGCTCTCCGC 1521870 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 ||| | || || ||||| | |||||| || || ||||||| || || || || Sbjct 1521869 ATGCCCTTCGACTCGCCCGCTGCTCGTCAGCTCAACCTCCAGATCTTCGAGACCATCTAC 1521810 Query 364561 TTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAG--GGAAAGTACTCTACT 364617 || || | || | | |||||||| |||| | | | || | ||| | | Sbjct 1521809 CACGCTGCTCTCGAGT-CGTCGTGTGAGATGGC--TGTCGAGGCTGGCACCTACCCCTCG 1521753 Query 364618 TATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCA 364677 || ||||| || || | |||||||| || | ||||| || || ||||| | || Sbjct 1521752 TACGAGGGTTCGCCCATCTCGCAGGGCAAGCTTCAGTTCGACCTCTGGAACCGCGTTCCT 1521693 Query 364678 TCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 | | || ||||||||||| ||| ||| || || ||||| ||| |||||| Sbjct 1521692 ACCGACCTCTGGAACTGGGACGAGCTCCGTGAGAAGATTGCCAAGCACGGTGTCCGCAAC 1521633 Query 364738 TC---CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 || ||||||| || || |||||||| || || || | ||||| ||||| ||| Sbjct 1521632 TCGCTCCTCGTT---GCCCCTATGCCCACCGCCTCGACCTCGCAGATTCTCGGCTGGAAC 1521576 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || | || || || || || ||||| || || || || Sbjct 1521575 GAGTGCTTCGAGCCCTACACCTCGATGCTCTACTCGCGTCGTGTTCTGTCAGGTGACTTC 1521516 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || | || | || || | ||| || || |||| || Sbjct 1521515 CAGGTCGTCTGCCCCTGGCTCCTTCGTGACCTCATCAACCTTGGTCTCTGGGACGAGGAG 1521456 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 |||||| | |||| || | |||||| | ||| ||||||| || | || || Sbjct 1521455 ATGAAGCAGCTCGTCATTGCTTCGGGTGGTTCCATCCAGCACATTCCTGGTATCCCCGAC 1521396 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGAT 365031 || | ||| | || ||||| ||||| ||||| ||||| || ||| | ||||||| Sbjct 1521395 GACATCAAGGCCATCTACAAGACCGTCTGGGAGATTTCGCA---GAAGGCCGTCATTGAC 1521339 Query 365032 ATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACT 365091 | || ||||| || || || || ||| ||| |||||| | ||| || || || Sbjct 1521338 CTTGCTGCCGACCGTGGAGCCTTCATCGACCAGTCGCAGTCGCTCAAC--ATCCA--CCT 1521283 Query 365092 CAGCCAACC-----TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 | ||||||| | | | |||| || || ||||| |||||||| ||||| ||||| Sbjct 1521282 C-GCCAACCCGTCGTTCTCGCAGCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGTC 1521224 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 1521223 TCAAGACCGG 1521214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353015527370