Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq6 123 2e-23 seq4 114 1e-20 seq9 91.5 1e-13 >seq1 Length=6947394 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | |||||||||||| || |||||||| || Sbjct 6691141 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 6691082 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 6691081 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 6691022 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 6691021 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 6690962 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 6690961 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6690915 >seq6 Length=1958011 Score = 123 bits (136), Expect = 2e-23 Identities = 294/434 (68%), Gaps = 9/434 (2%) Strand=Plus/Minus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || || |||||| || | || ||||| || |||||| |||| || || ||| ||| Sbjct 63527 TTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTT 63468 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 ||| ||||||| | |||| | ||| |||||||||| || || || |||||| Sbjct 63467 GCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAG 63408 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGC 46326 || || |||||||||||||| || || || |||||||| || || || | || | | Sbjct 63407 CTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTG--CCTGCTGT-TTACGCAC 63351 Query 46327 GTGCACGACAAGCTTGC-GCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCAT 46385 | | | | || || |||||| | | || || |||||||||| || || Sbjct 63350 CTCCGCCGC-CGCCCGCACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGAT 63292 Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC 46445 |||| ||||||| | || | || || |||| | ||| | ||||||||||| | | | Sbjct 63291 TGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGC-CGGAC 63233 Query 46446 -AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC-CG 46503 |||||| | ||||| |||||||| || ||||| |||||||| | | || || | | Sbjct 63232 TCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGT-CGCCCTCGGCAACGAG 63174 Query 46504 AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAA 46563 ||| | || || ||| || || || |||||| | | ||||| || ||||||| Sbjct 63173 AAGACGTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAG 63114 Query 46564 ACTAATTTTTTCGA 46577 | || || ||||| Sbjct 63113 GCCAACTTCTTCGA 63100 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 41897 CCTCCGCGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 41956 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 41957 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 42016 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || |||| ||||||| Sbjct 42017 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACC 42076 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 42077 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| ||| | ||||| |||||| ||||||||||| Sbjct 41471 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 41530 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||||||||||| |||||||| || || ||||| ||| || ||| Sbjct 41531 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTA 41590 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||||| |||| |||| || || ||||| || || Sbjct 41591 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTC 41650 Query 131218 TTTACGAAAATCTGCATGACT 131238 || || || ||||||||| || Sbjct 41651 TTCACAAAGATCTGCATGCCT 41671 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || | || | ||| |||||||| || |||||||| ||| | Sbjct 42125 CCTCCGCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 42184 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 42185 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGA 42244 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 42245 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 42304 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | ||| || ||||| || Sbjct 42305 TCGAGGGTGATGGTCTTGCCGGTGAG 42330 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||| || || | || | ||||||||||| || |||||||| || Sbjct 41668 GCCTCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 41727 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| ||| | || | ||||||||||| ||||| Sbjct 41728 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGG 41787 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | || || | ||||| | Sbjct 41788 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAAC 41847 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| | ||| || ||||| |||||||| Sbjct 41848 CTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 41895 >seq4 Length=2551142 Score = 114 bits (126), Expect = 1e-20 Identities = 115/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 46165 GCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATC 46224 || |||||| || |||||| |||| || || ||| ||||| |||||||| | || Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTC 1013464 Query 46225 AA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGA 46283 || || | |||| |||||| ||||||||||||| ||||||||| || ||||||||||| Sbjct 1013463 AAGAAGCGCGGGC-TCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGA 1013405 Query 46284 GGGCCTGCATACGGACTTTGCGTGTCT 46310 |||| |||| || |||||||| || || Sbjct 1013404 GGGCATGCACACCGACTTTGCATGCCT 1013378 >seq9 Length=1289175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||||| Sbjct 761749 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGAT 761690 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| ||| ||||| | || | || || | ||||||| || Sbjct 761689 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTC 761630 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || ||| | ||| || ||||| || || || || Sbjct 761629 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 761597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012593494400