Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 2e-25
seq6 123 2e-23
seq4 114 1e-20
seq9 91.5 1e-13
>seq1
Length=6947394
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || || || | || | |||||||||||| || |||||||| ||
Sbjct 6691141 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 6691082
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || |||
Sbjct 6691081 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 6691022
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || || | ||||||||
Sbjct 6691021 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 6690962
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || || || ||||| ||||||||
Sbjct 6690961 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6690915
>seq6
Length=1958011
Score = 123 bits (136), Expect = 2e-23
Identities = 294/434 (68%), Gaps = 9/434 (2%)
Strand=Plus/Minus
Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206
|| || |||||| || | || ||||| || |||||| |||| || || ||| |||
Sbjct 63527 TTTGCTGAGCGTCTGATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTT 63468
Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266
||| ||||||| | |||| | ||| |||||||||| || || || ||||||
Sbjct 63467 GCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAG 63408
Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGC 46326
|| || |||||||||||||| || || || |||||||| || || || | || | |
Sbjct 63407 CTCATTTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTG--CCTGCTGT-TTACGCAC 63351
Query 46327 GTGCACGACAAGCTTGC-GCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCAT 46385
| | | | || || |||||| | | || || |||||||||| || ||
Sbjct 63350 CTCCGCCGC-CGCCCGCACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGAT 63292
Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC 46445
|||| ||||||| | || | || || |||| | ||| | ||||||||||| | | |
Sbjct 63291 TGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGC-CGGAC 63233
Query 46446 -AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC-CG 46503
|||||| | ||||| |||||||| || ||||| |||||||| | | || || | |
Sbjct 63232 TCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGT-CGCCCTCGGCAACGAG 63174
Query 46504 AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAA 46563
||| | || || ||| || || || |||||| | | ||||| || |||||||
Sbjct 63173 AAGACGTACTACTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAG 63114
Query 46564 ACTAATTTTTTCGA 46577
| || || |||||
Sbjct 63113 GCCAACTTCTTCGA 63100
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||| || || | || | ||| |||||||| || |||||||| |||
Sbjct 41897 CCTCCGCGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 41956
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| ||| |||| | ||||||||||| || ||
Sbjct 41957 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 42016
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | || |||| |||||||
Sbjct 42017 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACC 42076
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || ||||| ||||||||
Sbjct 42077 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123
Score = 114 bits (126), Expect = 1e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
||||||||||| || |||||||| ||| | ||||| |||||| |||||||||||
Sbjct 41471 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 41530
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| | || | ||||||||||| |||||||| || || ||||| ||| || |||
Sbjct 41531 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTA 41590
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | || | || |||| ||||||| |||| |||| || || ||||| || ||
Sbjct 41591 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTAAGCGTC 41650
Query 131218 TTTACGAAAATCTGCATGACT 131238
|| || || ||||||||| ||
Sbjct 41651 TTCACAAAGATCTGCATGCCT 41671
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||| || || | || | ||| |||||||| || |||||||| ||| |
Sbjct 42125 CCTCCGCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 42184
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| ||| |||| | |||||||||||| || ||
Sbjct 42185 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGA 42244
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || || | ||||||||
Sbjct 42245 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 42304
Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213
|||| ||| | ||| || ||||| ||
Sbjct 42305 TCGAGGGTGATGGTCTTGCCGGTGAG 42330
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || |||| ||| || || | || | ||||||||||| || |||||||| ||
Sbjct 41668 GCCTCCACGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 41727
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| ||||| ||||||||||| ||| | || | ||||||||||| |||||
Sbjct 41728 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGAGG 41787
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| || ||| | | || | || || | ||||| |
Sbjct 41788 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATCGTGTCCGACGACTCAAC 41847
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | || || ||||| | ||| || ||||| ||||||||
Sbjct 41848 CTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 41895
>seq4
Length=2551142
Score = 114 bits (126), Expect = 1e-20
Identities = 115/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 46165 GCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATC 46224
|| |||||| || |||||| |||| || || ||| ||||| |||||||| | ||
Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTC 1013464
Query 46225 AA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGA 46283
|| || | |||| |||||| ||||||||||||| ||||||||| || |||||||||||
Sbjct 1013463 AAGAAGCGCGGGC-TCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGA 1013405
Query 46284 GGGCCTGCATACGGACTTTGCGTGTCT 46310
|||| |||| || |||||||| || ||
Sbjct 1013404 GGGCATGCACACCGACTTTGCATGCCT 1013378
>seq9
Length=1289175
Score = 91.5 bits (100), Expect = 1e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129
|||||| |||||| ||||||||||| ||| |||| | |||||||||||| || |||||
Sbjct 761749 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGAT 761690
Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189
|| || ||||| ||| ||| ||||| | || | || || | ||||||| ||
Sbjct 761689 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTC 761630
Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222
|| ||| | ||| || ||||| || || || ||
Sbjct 761629 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 761597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012593494400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |