Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 6e-20
seq4 89.7 7e-13
>seq6
Length=1958011
Score = 113 bits (124), Expect = 6e-20
Identities = 182/260 (70%), Gaps = 5/260 (2%)
Strand=Plus/Plus
Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709
|||||| || || || || ||| ||| ||||||||||| | ||| | ||||| |
Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415
Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769
| || ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||| || |
Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475
Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829
| || ||||| || || || || || ||||| ||||| || | ||| || ||| |
Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534
Query 32830 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885
| ||| ||||| | ||||| ||||||||||| || | || || || ||
Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594
Query 32886 TCTATAGCATTAAAGAGATA 32905
|| || || || ||||| ||
Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614
>seq4
Length=2551142
Score = 89.7 bits (98), Expect = 7e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| || ||||| || ||| ||| | |||||||| | || | ||||||||||
Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772
|||| || ||| |||| || || ||||| || ||||| || |||| |||||| || || |
Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492
Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809
| ||||| || || || || |||||| ||||| ||
Sbjct 1013493 AGAAGAAGATGCCCTCGACGCACGCAAACGCAATCAG 1013529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631722786000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |