Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 113 6e-20 seq4 89.7 7e-13 >seq6 Length=1958011 Score = 113 bits (124), Expect = 6e-20 Identities = 182/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 |||||| || || || || ||| ||| ||||||||||| | ||| | ||||| | Sbjct 63356 TAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAAATGAGCTCGTTCG 63415 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 | || ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||| || | Sbjct 63416 AGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGC 63475 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 | || ||||| || || || || || ||||| ||||| || | ||| || ||| | Sbjct 63476 CCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCAGACGCTCAGCA-AACGAAGAC 63534 Query 32830 T----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 | ||| ||||| | ||||| ||||||||||| || | || || || || Sbjct 63535 TTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTCTTCTTGATGCACGGAATGTTC 63594 Query 32886 TCTATAGCATTAAAGAGATA 32905 || || || || ||||| || Sbjct 63595 TCAATGGCGTTGAAGAGGTA 63614 >seq4 Length=2551142 Score = 89.7 bits (98), Expect = 7e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || ||||| || ||| ||| | |||||||| | || | |||||||||| Sbjct 1013373 ACAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAAA 1013432 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 |||| || ||| |||| || || ||||| || ||||| || |||| |||||| || || | Sbjct 1013433 ACGTCAGGCCGCGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCCGCAAACGAGCCCG 1013492 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 | ||||| || || || || |||||| ||||| || Sbjct 1013493 AGAAGAAGATGCCCTCGACGCACGCAAACGCAATCAG 1013529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631722786000