Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 >seq6 Length=1958011 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || | ||||| |||| || |||||||| Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| || | || |||| ||||| | || ||||| Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 41715 ATCCAGAAGGAGTCGACTCTCCA 41693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327815158525