Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 118 9e-22 seq1 87.8 2e-12 >seq6 Length=1958011 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| ||||| || || | || Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| ||||| ||||| || Sbjct 42063 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 42004 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||| ||| | ||||| |||||| Sbjct 42003 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAAC 41944 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || | || | ||||||||| Sbjct 41943 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTTCGCGGAGGT 41896 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || | || ||| | ||| | |||| Sbjct 42327 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAGTCC 42268 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| ||||| || || ||||| || || |||||||| Sbjct 42267 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGCAAG 42208 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||| ||| | ||||| |||||||| || || || |||||| | || Sbjct 42207 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 42148 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || | ||||||||| Sbjct 42147 CTCGTCCTTCGTCTCCGCGGAGGT 42124 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || ||| |||| || || || || | | Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||||||||| || ||||| || Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| |||||| |||| || |||||| Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 41715 ATCCAGAAGGAGTCGAC 41699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| | || || || || || | || Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||||||||| || ||||| || Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41548 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| ||||||| |||||| Sbjct 41547 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 41488 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 41487 ATCCAGAAGGAGTCGAC 41471 >seq1 Length=6947394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || || || || |||| || || || || || Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | |||| || || || ||||||||||| || || ||||| Sbjct 6690972 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 6691031 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| ||||||| | || || ||| Sbjct 6691032 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 6691091 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 6691092 AACATCCAGAAGGAGTCGACC 6691112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727820959775