Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 9e-22
seq1 87.8 2e-12
>seq6
Length=1958011
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| ||||| || || | ||
Sbjct 42123 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 42064
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||| ||||||||||| ||||| ||||| ||
Sbjct 42063 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 42004
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || |||||||| ||| | ||||| ||| ||| | ||||| ||||||
Sbjct 42003 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACAAC 41944
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | || | || | || | |||||||||
Sbjct 41943 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTTCGCGGAGGT 41896
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || || | || ||| | ||| | ||||
Sbjct 42327 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAGTCC 42268
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| ||||| || || ||||| || || ||||||||
Sbjct 42267 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGCAAG 42208
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||| ||| | ||||| |||||||| || || || |||||| | ||
Sbjct 42207 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 42148
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || | || | |||||||||
Sbjct 42147 CTCGTCCTTCGTCTCCGCGGAGGT 42124
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| ||||| || ||| |||| || || || || | |
Sbjct 41895 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCGTCG 41836
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || || || |||||||||||||| || ||||| ||
Sbjct 41835 GACACGATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41776
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || |||||||| ||| | |||||| |||||| |||| || ||||||
Sbjct 41775 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 41716
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 41715 ATCCAGAAGGAGTCGAC 41699
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | ||||| || ||| | || || || || || | ||
Sbjct 41667 ATGCAGATCTTTGTGAAGACGCTTACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCC 41608
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || || || |||||||||||||| || ||||| ||
Sbjct 41607 GACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 41548
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || |||||||| ||| | ||||| |||||| ||||||| ||||||
Sbjct 41547 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAAC 41488
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 41487 ATCCAGAAGGAGTCGAC 41471
>seq1
Length=6947394
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || || || || | || || || || |||| || || || || ||
Sbjct 6690912 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 6690971
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | ||| | |||| || || || ||||||||||| || || |||||
Sbjct 6690972 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 6691031
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || || |||||||| ||| | ||||| ||||||| | || || |||
Sbjct 6691032 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 6691091
Query 22396 AACATTCAAAAAGAATCCACC 22416
||||| || || || || |||
Sbjct 6691092 AACATCCAGAAGGAGTCGACC 6691112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727820959775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |