Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 132 1e-25 seq1 114 3e-20 seq6 113 9e-20 seq3 105 1e-17 >seq9 Length=1289175 Score = 132 bits (146), Expect = 1e-25 Identities = 340/514 (66%), Gaps = 8/514 (2%) Strand=Plus/Plus Query 218505 CATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGA 218564 ||||||| | | ||||| || ||||||||||||| || ||||| | ||| Sbjct 1226446 CATCCCCCTTCAGGACTTTGTCAACAAGGAGCTCATCCTCTTCTCCATGGCCGATAACAT 1226505 Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 ||||| || ||| || | || ||||||||||| ||||| ||| || | || || Sbjct 1226506 TCGTTCCATCCCCTCGGTTGCCGACGGCCTCAAGCCTGGTCAGCGCAAGGTCATGTTCGC 1226565 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 | ||| || ||||| | ||||| |||||||| ||| | |||||| || || Sbjct 1226566 CTGCTTCTTACGCAACCTCAAGAAGGAAATCAAGGTCGCCCAGCTCGGTGGTTACGTTTC 1226625 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 || | | | ||||| ||||| || ||| || | | ||||| || | || Sbjct 1226626 GGAGAAGACAGCATACCACCACGGCGAAGCCAGTTTGATGTCCACGATTGTTGGTCTCGC 1226685 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTC 218804 ||| ||||||| ||||| |||||||| ||| | || |||||||||||||| ||| | Sbjct 1226686 CCAGAACTATGTCGGCAGCAACAACATCAACCTTCTCGAGCCCAACGGTCAGTTCGGTAC 1226745 Query 218805 TCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCC--AGGTATATCTTTACAAAGTTGTCG 218862 ||| | ||||||||||||| || | ||| | ||||| || || || ||| Sbjct 1226746 TCGCATGCAGGGTGGAAAGGATGCGGC--CAGCCCTCGTTATATTTTCACCAA--CGTCC 1226801 Query 218863 CCCG--TGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGG 218920 |||| |||| ||| | | ||| | | ||||| || | | || || || ||| | | Sbjct 1226802 CCCGCATGACCCGCACGATCTTCCACCCCGCCGACGACGCCATTCTCAACTACCTTAATG 1226861 Query 218921 ACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAA 218980 | ||||| ||| |||||||||| ||| | || | ||||| | | ||| | | Sbjct 1226862 AAGATGGCCAGAAGATCGAGCCCGAGTACTATCTTCCCACCATTCCCATGGTTCTCATCA 1226921 Query 218981 ATGGTGCCAATGGTATCGGGACAGGGTTCAGTAC 219014 | |||||| | ||||| || || || | ||||| Sbjct 1226922 ACGGTGCCGACGGTATTGGTACCGGTTGGAGTAC 1226955 >seq1 Length=6947394 Score = 114 bits (126), Expect = 3e-20 Identities = 180/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || ||||||||||||||||||||||| | || | || || || || | ||||| Sbjct 5914822 TCGCTCTCGGGTGGTTGGAAGATGAAGCTCGAGCTTGCGCGTGCGATGCTCATCGGTGCC 5914763 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || ||||| |||||||| |||||||| | ||| | | ||| || ||||| Sbjct 5914762 GACATTCTTCTGCTCGATGAGCCTACCAACCATCTCGACGTCCAGACCGTCGCATGGCTC 5914703 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | |||||| | ||| || | | || | | | | || ||||| |||||||||||| Sbjct 5914702 GAGAGCTACCTCAACAGCCTCTCGGAAGTGACCTGCATGATCGTCTCGCACGACTCTGGC 5914643 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || || || | | ||| || ||||| ||||| || ||||||| | | Sbjct 5914642 TTCCTCGACAATGTCTGTACCGACATTATCCACTACGAGCAGAA---GAAGCTCGCATAC 5914586 Query 279942 CACATCGGCAACCTGTC 279958 ||| || |||||||| Sbjct 5914585 TACAAGGGAAACCTGTC 5914569 Score = 96.9 bits (106), Expect = 7e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 |||||| | || ||||| ||||| || ||||| || || ||||| ||||||| |||||| Sbjct 5914354 GGTGTCGTCGGCCCCAACGGTGCCGGCAAGTCGACTCTCATCAAGCTCCTGACCGGCGAG 5914295 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | ||||| |||| ||||| ||| | || | | ||| || || Sbjct 5914294 ACCGTCCCGCAGGAGGGTACCGTGCACAAGCACCCCGCTCTCCGTGTCGGTTATGTTGCG 5914235 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||| | | ||||| |||| |||| | || ||||| ||| Sbjct 5914234 CAGCACGCGTTCCACCACATCAACCAGCACCTCGACAAGACTGCCGTGCAGTACATCCAG 5914175 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 5914174 TGGCGTTA 5914167 >seq6 Length=1958011 Score = 113 bits (124), Expect = 9e-20 Identities = 383/585 (65%), Gaps = 15/585 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||| |||||||||||||| || Sbjct 63100 TCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTC 63159 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | |||| ||| | ||| || || |||| | ||||| || |||||||| | Sbjct 63160 GAGTAGTACGTCTTCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAATG 63219 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 ||||| | ||| ||| | | |||||||||||||| ||| | || | ||||| || Sbjct 63220 TACTGGCACATGAGTCCGGCGTTCATGCCAATCA-GCGAGACGGGGAGCGCCTCGGTGAG 63278 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACA 251800 ||| |||| || | || ||||||| | ||| |||| | || | | | Sbjct 63279 GAACTCCTGCTCAATCTTGACGGCCTCCTTGATAAT---CTTCTCGATGAGGTCG-GGGT 63334 Query 251801 GCTTG-TTCTCCAGCTTTGAGT--ACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 || | | | | || || |||| || | |||| | ||| |||||||||| Sbjct 63335 GCGGGCGGCGGCGGAGGTGCGTAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGT 63394 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| |||| |||||| || | || || ||||| | || || ||| |||||| Sbjct 63395 CGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCC 63454 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | | ||| || || ||||| | | |||||||| | | |||| | Sbjct 63455 AGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCA 63514 Query 251978 GGCGCTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCT 252034 | |||||||||||| ||||| || | ||| | | | | ||||| | |||||| Sbjct 63515 GACGCTCAGCAAACGAAGACTTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTC- 63573 Query 252035 TTCCAACCGCGGGGATTGTT-TCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 ||| || ||| |||| || || || | ||||| | | || ||||| ||| Sbjct 63574 TTCTTGATGCACGGAATGTTCTCAATGGCGTTGAAGAGGTACGTGCGGCGGGCATTGTCG 63633 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 ||| || || | ||||| |||||| ||||||| |||||| Sbjct 63634 CGAATGTACGTGTCGATGAGGAGTGAGTACGTCTCCGAGTGGATG 63678 >seq3 Length=3222897 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| ||||| | || ||||| || | ||| Sbjct 993604 GGTTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCCCTTGCGCGTGCCATCCTCTTCCGT 993545 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| || |||||| | ||| | |||||| ||||| Sbjct 993544 GCCGACATTCTCCTCCTCGACGAGCCCACTAACCACCTCGACGTCGTCAACGTCACCTGG 993485 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || |||| | || |||| ||||| |||||||| Sbjct 993484 CTCATCGACTACCTCACCTCGCTCAAGACCTGCACCTCGATCATGGTCTCGCACGACTCG 993425 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 993424 GACTTCCT 993417 Score = 102 bits (112), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| ||||| |||| |||| || |||||||| || || Sbjct 993121 GGTCCCAACGGTTCCGGAAAGTCGACCCTCGTCAAGCTCCTTACCGGCGAGACTGAGCCC 993062 Query 280239 ACTGAGGG--GT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| || |||| |||||||| || ||| | || | |||||| || |||||| Sbjct 993061 AACAAGGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCCCAGCAC 993002 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 |||||||||||||| || | ||||| ||| |||||| | | ||||| | ||||| Sbjct 993001 GCTTTCCACCACATTGACCAGCACCTCGACTCGACTCCCCTCGAGTACATGCTCTGGCGT 992942 Query 280356 TA 280357 || Sbjct 992941 TA 992940 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCA 280771 ||| || ||||| || || |||||||||||||| | ||| | || || || |||| Sbjct 992570 CATGCGTGGTCTCTCGGGTGGCCAGAAGGTCAAGGTCGTCCTTGGTGCCGCCACCTGGCG 992511 Query 280772 ACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 | ||| ||||| ||| |||||||||||| |||||||| || ||||||||| Sbjct 992510 CCGCCCCCACGTCATCTGTCTCGACGAGCCCACCAACTACCTCGACCGCGAG 992459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836339079435