Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9 132 1e-25
seq1 114 3e-20
seq6 113 9e-20
seq3 105 1e-17
>seq9
Length=1289175
Score = 132 bits (146), Expect = 1e-25
Identities = 340/514 (66%), Gaps = 8/514 (2%)
Strand=Plus/Plus
Query 218505 CATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGA 218564
||||||| | | ||||| || ||||||||||||| || ||||| | |||
Sbjct 1226446 CATCCCCCTTCAGGACTTTGTCAACAAGGAGCTCATCCTCTTCTCCATGGCCGATAACAT 1226505
Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624
||||| || ||| || | || ||||||||||| ||||| ||| || | || ||
Sbjct 1226506 TCGTTCCATCCCCTCGGTTGCCGACGGCCTCAAGCCTGGTCAGCGCAAGGTCATGTTCGC 1226565
Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684
| ||| || ||||| | ||||| |||||||| ||| | |||||| || ||
Sbjct 1226566 CTGCTTCTTACGCAACCTCAAGAAGGAAATCAAGGTCGCCCAGCTCGGTGGTTACGTTTC 1226625
Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744
|| | | | ||||| ||||| || ||| || | | ||||| || | ||
Sbjct 1226626 GGAGAAGACAGCATACCACCACGGCGAAGCCAGTTTGATGTCCACGATTGTTGGTCTCGC 1226685
Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTC 218804
||| ||||||| ||||| |||||||| ||| | || |||||||||||||| ||| |
Sbjct 1226686 CCAGAACTATGTCGGCAGCAACAACATCAACCTTCTCGAGCCCAACGGTCAGTTCGGTAC 1226745
Query 218805 TCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCC--AGGTATATCTTTACAAAGTTGTCG 218862
||| | ||||||||||||| || | ||| | ||||| || || || |||
Sbjct 1226746 TCGCATGCAGGGTGGAAAGGATGCGGC--CAGCCCTCGTTATATTTTCACCAA--CGTCC 1226801
Query 218863 CCCG--TGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGG 218920
|||| |||| ||| | | ||| | | ||||| || | | || || || ||| | |
Sbjct 1226802 CCCGCATGACCCGCACGATCTTCCACCCCGCCGACGACGCCATTCTCAACTACCTTAATG 1226861
Query 218921 ACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAA 218980
| ||||| ||| |||||||||| ||| | || | ||||| | | ||| | |
Sbjct 1226862 AAGATGGCCAGAAGATCGAGCCCGAGTACTATCTTCCCACCATTCCCATGGTTCTCATCA 1226921
Query 218981 ATGGTGCCAATGGTATCGGGACAGGGTTCAGTAC 219014
| |||||| | ||||| || || || | |||||
Sbjct 1226922 ACGGTGCCGACGGTATTGGTACCGGTTGGAGTAC 1226955
>seq1
Length=6947394
Score = 114 bits (126), Expect = 3e-20
Identities = 180/257 (70%), Gaps = 3/257 (1%)
Strand=Plus/Minus
Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761
|| || ||||||||||||||||||||||| | || | || || || || | |||||
Sbjct 5914822 TCGCTCTCGGGTGGTTGGAAGATGAAGCTCGAGCTTGCGCGTGCGATGCTCATCGGTGCC 5914763
Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821
|| | || ||||| |||||||| |||||||| | ||| | | ||| || |||||
Sbjct 5914762 GACATTCTTCTGCTCGATGAGCCTACCAACCATCTCGACGTCCAGACCGTCGCATGGCTC 5914703
Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881
| | |||||| | ||| || | | || | | | | || ||||| ||||||||||||
Sbjct 5914702 GAGAGCTACCTCAACAGCCTCTCGGAAGTGACCTGCATGATCGTCTCGCACGACTCTGGC 5914643
Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941
||||| || || || | | ||| || ||||| ||||| || ||||||| | |
Sbjct 5914642 TTCCTCGACAATGTCTGTACCGACATTATCCACTACGAGCAGAA---GAAGCTCGCATAC 5914586
Query 279942 CACATCGGCAACCTGTC 279958
||| || ||||||||
Sbjct 5914585 TACAAGGGAAACCTGTC 5914569
Score = 96.9 bits (106), Expect = 7e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
|||||| | || ||||| ||||| || ||||| || || ||||| ||||||| ||||||
Sbjct 5914354 GGTGTCGTCGGCCCCAACGGTGCCGGCAAGTCGACTCTCATCAAGCTCCTGACCGGCGAG 5914295
Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
||| | ||||| |||| ||||| ||| | || | | ||| || ||
Sbjct 5914294 ACCGTCCCGCAGGAGGGTACCGTGCACAAGCACCCCGCTCTCCGTGTCGGTTATGTTGCG 5914235
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349
|||||||| |||||||||||| | | ||||| |||| |||| | || ||||| |||
Sbjct 5914234 CAGCACGCGTTCCACCACATCAACCAGCACCTCGACAAGACTGCCGTGCAGTACATCCAG 5914175
Query 280350 TGGCGCTA 280357
||||| ||
Sbjct 5914174 TGGCGTTA 5914167
>seq6
Length=1958011
Score = 113 bits (124), Expect = 9e-20
Identities = 383/585 (65%), Gaps = 15/585 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||||| || ||||| | |||||| |||||||||||||| ||
Sbjct 63100 TCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTC 63159
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| | |||| ||| | ||| || || |||| | ||||| || |||||||| |
Sbjct 63160 GAGTAGTACGTCTTCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAATG 63219
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741
||||| | ||| ||| | | |||||||||||||| ||| | || | ||||| ||
Sbjct 63220 TACTGGCACATGAGTCCGGCGTTCATGCCAATCA-GCGAGACGGGGAGCGCCTCGGTGAG 63278
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACA 251800
||| |||| || | || ||||||| | ||| |||| | || | | |
Sbjct 63279 GAACTCCTGCTCAATCTTGACGGCCTCCTTGATAAT---CTTCTCGATGAGGTCG-GGGT 63334
Query 251801 GCTTG-TTCTCCAGCTTTGAGT--ACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857
|| | | | | || || |||| || | |||| | ||| ||||||||||
Sbjct 63335 GCGGGCGGCGGCGGAGGTGCGTAAACAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGT 63394
Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917
|||| |||| |||||| || | || || ||||| | || || ||| ||||||
Sbjct 63395 CGCGCGAAATGAGCTCGTTCGAGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCC 63454
Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977
||||||| | | ||| || || ||||| | | |||||||| | | |||| |
Sbjct 63455 AGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAACGCAATCA 63514
Query 251978 GGCGCTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCT 252034
| |||||||||||| ||||| || | ||| | | | | ||||| | ||||||
Sbjct 63515 GACGCTCAGCAAACGAAGACTTCTCGTCCGAGATCCAGCGCAGCGCCCAGTCGGCCTTC- 63573
Query 252035 TTCCAACCGCGGGGATTGTT-TCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093
||| || ||| |||| || || || | ||||| | | || ||||| |||
Sbjct 63574 TTCTTGATGCACGGAATGTTCTCAATGGCGTTGAAGAGGTACGTGCGGCGGGCATTGTCG 63633
Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
||| || || | ||||| |||||| ||||||| ||||||
Sbjct 63634 CGAATGTACGTGTCGATGAGGAGTGAGTACGTCTCCGAGTGGATG 63678
>seq3
Length=3222897
Score = 105 bits (116), Expect = 1e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
||||| || || |||||||||||||||||||| ||||| | || ||||| || | |||
Sbjct 993604 GGTTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCCCTTGCGCGTGCCATCCTCTTCCGT 993545
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
||||| | || || || || ||||| || |||||| | ||| | |||||| |||||
Sbjct 993544 GCCGACATTCTCCTCCTCGACGAGCCCACTAACCACCTCGACGTCGTCAACGTCACCTGG 993485
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | |||||| ||| || |||| | || |||| ||||| ||||||||
Sbjct 993484 CTCATCGACTACCTCACCTCGCTCAAGACCTGCACCTCGATCATGGTCTCGCACGACTCG 993425
Query 279879 GGCTTCCT 279886
| ||||||
Sbjct 993424 GACTTCCT 993417
Score = 102 bits (112), Expect = 2e-16
Identities = 133/182 (73%), Gaps = 3/182 (2%)
Strand=Plus/Minus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| ||||| ||| | || ||||| ||||| |||| |||| || |||||||| || ||
Sbjct 993121 GGTCCCAACGGTTCCGGAAAGTCGACCCTCGTCAAGCTCCTTACCGGCGAGACTGAGCCC 993062
Query 280239 ACTGAGGG--GT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295
| |||| || |||| |||||||| || ||| | || | |||||| || ||||||
Sbjct 993061 AACAAGGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCCCAGCAC 993002
Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355
|||||||||||||| || | ||||| ||| |||||| | | ||||| | |||||
Sbjct 993001 GCTTTCCACCACATTGACCAGCACCTCGACTCGACTCCCCTCGAGTACATGCTCTGGCGT 992942
Query 280356 TA 280357
||
Sbjct 992941 TA 992940
Score = 86.0 bits (94), Expect = 1e-11
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCA 280771
||| || ||||| || || |||||||||||||| | ||| | || || || ||||
Sbjct 992570 CATGCGTGGTCTCTCGGGTGGCCAGAAGGTCAAGGTCGTCCTTGGTGCCGCCACCTGGCG 992511
Query 280772 ACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823
| ||| ||||| ||| |||||||||||| |||||||| || |||||||||
Sbjct 992510 CCGCCCCCACGTCATCTGTCTCGACGAGCCCACCAACTACCTCGACCGCGAG 992459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836339079435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |