Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 466 3e-126 seq6 315 1e-80 seq4 154 3e-32 >seq1 Length=6947394 Score = 466 bits (516), Expect = 3e-126 Identities = 1226/1854 (66%), Gaps = 69/1854 (4%) Strand=Plus/Plus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 |||||||| |||||||||||||| || | |||| ||| || |||||| | || ||| Sbjct 1521202 AGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGC 1521261 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 | | | | || |||| | | || || |||||| ||||| |||| Sbjct 1521262 TGCGAGAAC--GAC----GGGTTGGCG------AGGTGGATGTTGAGCGACTGCGACTGG 1521309 Query 243896 TCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATAC 243955 |||| ||||| | || || || || | | |||| | ||||||| || ||||| | Sbjct 1521310 TCGATGAAGGCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAG 1521369 Query 243956 GCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC- 244014 | ||||||||||||| ||||| || ||||||| || |||| ||| | || || Sbjct 1521370 ACGGTCTTGTAGATGGCCTTGATGTCGTCGGGGATACCAGGAATGTGCTGGATGGAACCA 1521429 Query 244015 CTTGTGG--ACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGC 244072 | | | | || |||||| | ||| | |||| ||| || || | | || Sbjct 1521430 CCCGAAGCAATGACGAGCTGCTT---CATCTCCTCGTCCCAGAGACCAAGGTTGATGAG- 1521485 Query 244073 GCCTCGACCAGGTGCCTGTTC---ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 | | ||| ||| ||| | || ||||| || || || ||||| || || ||| | Sbjct 1521486 GTCACGA--AGGAGCCAGGGGCAGACGACCTGGAAGTCACCTGACAGAACACGACGCGAG 1521543 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 ||||| | | || ||||||| || ||| | ||| || ||||||| || Sbjct 1521544 TAGAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAG 1521603 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249 || || ||||| || | || || || ||| | || |||||| | || Sbjct 1521604 GCGGTGGGCATAGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTTGGCAATCTTCTCA 1521663 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 | |||||||| ||||| ||| | | | | ||| | || ||| ||| | ||| Sbjct 1521664 CGGAGCTCGTCCCAGTTCCAGAGGTCGGT-AGGAACGCG-GTT-------CCAGAGGTCG 1521714 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC-GTCGCG 244368 ||||| ||| |||| || ||| |||||||| | ||||||| || | | || Sbjct 1521715 AACTGAAGCTTGCCCTGCGAGATGGGCGAACCCTCGTACGAGGGGTAGGTGCCAGCCTCG 1521774 Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 | ||| || ||| | ||||| || |||| ||||||||||||||||||| Sbjct 1521775 ACAG-CCATCTCACACGACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAG 1521833 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | | || || | || |||||| |||| | ||||||| |||||| Sbjct 1521834 GTTGAGCTGACGAGCAGCGGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGC 1521893 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 || ||||| || |||| || | ||| | ||| ||| |||| ||| ||| ||||| Sbjct 1521894 AAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGCCTCGGG 1521953 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGAC 244608 |||||||| |||||| ||| || || |||||| ||||| | | || Sbjct 1521954 GACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGAT 1522013 Query 244609 GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAA 244668 ||| ||| || |||||||| || | || | ||| |||| Sbjct 1522014 CTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGA------------CAAA 1522061 Query 244669 CTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTG 244728 | ||| |||| ||| |||||||||||||| ||||| || | | ||||| Sbjct 1522062 GGCAGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTC 1522121 Query 244729 GACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTT 244788 | ||||| ||||||||||| |||||||||| ||||||||||| || || ||||| Sbjct 1522122 AATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTT 1522181 Query 244789 GGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAG 244848 | |||| |||||||||||||||||||||||| || || ||||| |||||| | || Sbjct 1522182 GCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAG 1522241 Query 244849 GACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 || | | |||||| | | |||||||| ||| ||||| |||||||||| |||||| Sbjct 1522242 GATGGAGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTA 1522301 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT---AGGCCGGGGCACGA 244965 ||| || ||||| ||||| || || |||| || ||||||||| Sbjct 1522302 CTTCTCGTAGAGAGCCTCAAACTCCT---CCGAGTGGACGTCCGAGAGACCGGGGCACTC 1522358 Query 244966 CGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025 || ||||||||||| |||| ||||| || ||| ||| | || ||||||||||||||| Sbjct 1522359 GGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGG 1522418 Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085 |||||||||||| | ||||||||| | | | ||| ||| ||| |||||| | Sbjct 1522419 GATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCG 1522478 Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145 || || | ||||| ||||||||| ||||||| ||||| | ||||| || | ||| || Sbjct 1522479 GAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 1522538 Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCA 245201 ||| |||||||||||||||||||| | | | ||||| |||| | | || | Sbjct 1522539 GGGGCGCTTGTTGCCTCCCTGGTCGA----CGTAACGAGCAGTAGCGTCGTATGCACGGA 1522594 Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC 245261 | | || || || ||||| |||| |||||||| || ||||| | |||||| | | Sbjct 1522595 GCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCAC 1522654 Query 245262 TGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCT 245321 || |||| |||| | || | |||||||| ||||||||| |||||||| ||| Sbjct 1522655 GGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT 1522714 Query 245322 TGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGG 245381 ||| |||||| || || || || |||| ||||||| || || ||||| || | Sbjct 1522715 TGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACG 1522774 Query 245382 ACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 ||| |||||| |||||| | | | |||||| || || || ||||||||| ||||||| Sbjct 1522775 ACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGC 1522834 Query 245442 GGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCA 245501 | ||| | || ||| |||| | | ||| |||||||||||||||| | | Sbjct 1522835 GCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGA--TACC 1522892 Query 245502 GGGCG-CAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCT--TG 245557 | || ||| | ||||| |||||||||| |||| | | || | ||| | | Sbjct 1522893 GATCGACACGCGCATGATCATGTGCTGGGGACGCTCG--GCGACCTTGCCGTCGATGCGG 1522950 Query 245558 AGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 || | ||| |||||||| || |||||||| |||||||| |||| ||||||| Sbjct 1522951 AGGAGGTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTAGTTATAGCTAAAGTCG 1523004 >seq6 Length=1958011 Score = 315 bits (348), Expect = 1e-80 Identities = 443/608 (73%), Gaps = 27/608 (4%) Strand=Plus/Minus Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGAT--- 42590 |||||| | ||||| ||| |||| | ||| |||| |||||||||| | || Sbjct 63683 GAGAACATCCACTCGGAGACGTACTC---ACTCCTCATCGACACGTACATTCGCGACAAT 63627 Query 42591 -CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649 |||| || |||| | | ||||| ||||| |||| || || |||||||||||||| Sbjct 63626 GCCCGCCGCACGTACC----TCTTCAACGCCATTGAGAACATTCCGTGCATCAAGAAGAA 63571 Query 42650 GGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGG 42708 ||| ||||||||||| ||||||| | | | || | | |||| | ||| | ||| Sbjct 63570 GGCCGACTGGGCGCTGCGCTGGATCTCG-GACGAGAAGTCTTCGTTTGCTGAGCGTCTGA 63512 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | || ||| ||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct 63511 TTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGC 63452 Query 42769 TCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 ||||| || || || |||||||| ||||||||||||||||| ||||| | ||| Sbjct 63451 TCAAGAAGCGCGGCCTC-ATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGAC 63393 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC 42887 ||||| || || | |||||||||||||| ||||| || || || | | | | || | Sbjct 63392 GAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGCCGCCGCCCGCAC 63333 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | || | || | || |||| ||||||||| |||| ||| ||||||||||| Sbjct 63332 CC---CGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTC 63276 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 || || |||| ||||| || ||| | ||||||||| || ||||||||| ||||||| Sbjct 63275 ACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATT 63216 Query 43008 CAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACG 43064 ||| |||||||||| ||| || || ||| | || | || | | ||| || || Sbjct 63215 GAGTTTGTCGCCGACCGTCTGCTCGTCGCC--CTCGGCAACGAGAAGAC-GTACTACTCG 63159 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||||||||||||||||| |||||| | |||||||| ||||||| |||||| Sbjct 63158 ACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAG 63099 Query 43125 AAGCGCGT 43132 ||| || Sbjct 63098 TCGCGTGT 63091 >seq4 Length=2551142 Score = 154 bits (170), Expect = 3e-32 Identities = 240/342 (70%), Gaps = 12/342 (4%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGC---AACGTTCGGCGAG 42701 || ||||| ||||||||||||| | || | |||||| | ||||| || Sbjct 1013586 AAAAAGGCAAACTGGGCGCTCAAGTATAT------TACCGACGAGGTACCGTTCCGCATC 1013533 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | ||| | || ||| | ||||||||||||||||||||||||| | || || ||||| Sbjct 1013532 CGCCTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATC 1013473 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 |||||||||||| || | | |||| ||| || || || || ||||| |||||| Sbjct 1013472 TTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCG 1013413 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | |||||||| |||| | |||||||| ||||| |||| | | ||||||| |||| Sbjct 1013412 CGCGACGAGGGCATGCACACCGACTTTGCATGCCTGCTGTAC---GGGCACCTCAAGCAC 1013356 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 | | || |||||| ||| | | || | |||||||| || ||||| |||||| Sbjct 1013355 CGGTGCCCGCAGGAGCAGGTGCACGAGATTGTGCGCGAGGCCGTCGAAATCGAAAAGGAG 1013296 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 ||||| ||| | ||||||| ||||| ||||||| ||| Sbjct 1013295 TTCCTGACGGACGCGCTGCCATGCGCCCTGATCGGCATCAAC 1013254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338786851600