Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1 466 3e-126
seq6 315 1e-80
seq4 154 3e-32
>seq1
Length=6947394
Score = 466 bits (516), Expect = 3e-126
Identities = 1226/1854 (66%), Gaps = 69/1854 (4%)
Strand=Plus/Plus
Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835
|||||||| |||||||||||||| || | |||| ||| || |||||| | || |||
Sbjct 1521202 AGGTAGTAGATGCCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGC 1521261
Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895
| | | | || |||| | | || || |||||| ||||| ||||
Sbjct 1521262 TGCGAGAAC--GAC----GGGTTGGCG------AGGTGGATGTTGAGCGACTGCGACTGG 1521309
Query 243896 TCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATAC 243955
|||| ||||| | || || || || | | |||| | ||||||| || ||||| |
Sbjct 1521310 TCGATGAAGGCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGCGAAATCTCCCAG 1521369
Query 243956 GCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC- 244014
| ||||||||||||| ||||| || ||||||| || |||| ||| | || ||
Sbjct 1521370 ACGGTCTTGTAGATGGCCTTGATGTCGTCGGGGATACCAGGAATGTGCTGGATGGAACCA 1521429
Query 244015 CTTGTGG--ACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGC 244072
| | | | || |||||| | ||| | |||| ||| || || | | ||
Sbjct 1521430 CCCGAAGCAATGACGAGCTGCTT---CATCTCCTCGTCCCAGAGACCAAGGTTGATGAG- 1521485
Query 244073 GCCTCGACCAGGTGCCTGTTC---ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129
| | ||| ||| ||| | || ||||| || || || ||||| || || ||| |
Sbjct 1521486 GTCACGA--AGGAGCCAGGGGCAGACGACCTGGAAGTCACCTGACAGAACACGACGCGAG 1521543
Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189
||||| | | || ||||||| || ||| | ||| || ||||||| ||
Sbjct 1521544 TAGAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAG 1521603
Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249
|| || ||||| || | || || || ||| | || |||||| | ||
Sbjct 1521604 GCGGTGGGCATAGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTTGGCAATCTTCTCA 1521663
Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309
| |||||||| ||||| ||| | | | | ||| | || ||| ||| | |||
Sbjct 1521664 CGGAGCTCGTCCCAGTTCCAGAGGTCGGT-AGGAACGCG-GTT-------CCAGAGGTCG 1521714
Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC-GTCGCG 244368
||||| ||| |||| || ||| |||||||| | ||||||| || | | ||
Sbjct 1521715 AACTGAAGCTTGCCCTGCGAGATGGGCGAACCCTCGTACGAGGGGTAGGTGCCAGCCTCG 1521774
Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428
| ||| || ||| | ||||| || |||| |||||||||||||||||||
Sbjct 1521775 ACAG-CCATCTCACACGACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAG 1521833
Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488
||| | | || || | || |||||| |||| | ||||||| ||||||
Sbjct 1521834 GTTGAGCTGACGAGCAGCGGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGC 1521893
Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548
|| ||||| || |||| || | ||| | ||| ||| |||| ||| ||| |||||
Sbjct 1521894 AAGACCCTGGACACCGAGACCAACGGGGCGGTGACGCATGTTCGAGTTGCGGGCCTCGGG 1521953
Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGAC 244608
|||||||| |||||| ||| || || |||||| ||||| | | ||
Sbjct 1521954 GACGGGGTAGTAGTTGCGCGAGATGACACAGTCGAGGTTCTTGGTGACGACCTTGGTGAT 1522013
Query 244609 GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAA 244668
||| ||| || |||||||| || | || | ||| ||||
Sbjct 1522014 CTCGTGGAGCTTCTTGAAGTCGTAGGTGTTGTTCTCAAAGTCGA------------CAAA 1522061
Query 244669 CTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTG 244728
| ||| |||| ||| |||||||||||||| ||||| || | | |||||
Sbjct 1522062 GGCAGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTC 1522121
Query 244729 GACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTT 244788
| ||||| ||||||||||| |||||||||| ||||||||||| || || |||||
Sbjct 1522122 AATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTT 1522181
Query 244789 GGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAG 244848
| |||| |||||||||||||||||||||||| || || ||||| |||||| | ||
Sbjct 1522182 GCGGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAG 1522241
Query 244849 GACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908
|| | | |||||| | | |||||||| ||| ||||| |||||||||| ||||||
Sbjct 1522242 GATGGAGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTA 1522301
Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT---AGGCCGGGGCACGA 244965
||| || ||||| ||||| || || |||| || |||||||||
Sbjct 1522302 CTTCTCGTAGAGAGCCTCAAACTCCT---CCGAGTGGACGTCCGAGAGACCGGGGCACTC 1522358
Query 244966 CGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025
|| ||||||||||| |||| ||||| || ||| ||| | || |||||||||||||||
Sbjct 1522359 GGCAGGGCACATGAGGGTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGG 1522418
Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085
|||||||||||| | ||||||||| | | | ||| ||| ||| |||||| |
Sbjct 1522419 GATCCAGAGGGCGTAGAAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCG 1522478
Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145
|| || | ||||| ||||||||| ||||||| ||||| | ||||| || | ||| ||
Sbjct 1522479 GAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 1522538
Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCA 245201
||| |||||||||||||||||||| | | | ||||| |||| | | || |
Sbjct 1522539 GGGGCGCTTGTTGCCTCCCTGGTCGA----CGTAACGAGCAGTAGCGTCGTATGCACGGA 1522594
Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC 245261
| | || || || ||||| |||| |||||||| || ||||| | |||||| | |
Sbjct 1522595 GCATGGGGACAATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCAC 1522654
Query 245262 TGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCT 245321
|| |||| |||| | || | |||||||| ||||||||| |||||||| |||
Sbjct 1522655 GGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT 1522714
Query 245322 TGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGG 245381
||| |||||| || || || || |||| ||||||| || || ||||| || |
Sbjct 1522715 TGAGGGTGTCGTAGATACCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACG 1522774
Query 245382 ACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441
||| |||||| |||||| | | | |||||| || || || ||||||||| |||||||
Sbjct 1522775 ACATCTGGGGGTTGGGGGTACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGC 1522834
Query 245442 GGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCA 245501
| ||| | || ||| |||| | | ||| |||||||||||||||| | |
Sbjct 1522835 GCTCCGACATGAGGTTGTAAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGA--TACC 1522892
Query 245502 GGGCG-CAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCT--TG 245557
| || ||| | ||||| |||||||||| |||| | | || | ||| | |
Sbjct 1522893 GATCGACACGCGCATGATCATGTGCTGGGGACGCTCG--GCGACCTTGCCGTCGATGCGG 1522950
Query 245558 AGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611
|| | ||| |||||||| || |||||||| |||||||| |||| |||||||
Sbjct 1522951 AGGAGGTACGAGCGCTCAAGGGTCTTGAAGCCAAAGTAGTTATAGCTAAAGTCG 1523004
>seq6
Length=1958011
Score = 315 bits (348), Expect = 1e-80
Identities = 443/608 (73%), Gaps = 27/608 (4%)
Strand=Plus/Minus
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGAT--- 42590
|||||| | ||||| ||| |||| | ||| |||| |||||||||| | ||
Sbjct 63683 GAGAACATCCACTCGGAGACGTACTC---ACTCCTCATCGACACGTACATTCGCGACAAT 63627
Query 42591 -CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649
|||| || |||| | | ||||| ||||| |||| || || ||||||||||||||
Sbjct 63626 GCCCGCCGCACGTACC----TCTTCAACGCCATTGAGAACATTCCGTGCATCAAGAAGAA 63571
Query 42650 GGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGG 42708
||| ||||||||||| ||||||| | | | || | | |||| | ||| | |||
Sbjct 63570 GGCCGACTGGGCGCTGCGCTGGATCTCG-GACGAGAAGTCTTCGTTTGCTGAGCGTCTGA 63512
Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768
| || ||| ||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 63511 TTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGGC 63452
Query 42769 TCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827
||||| || || || |||||||| ||||||||||||||||| ||||| | |||
Sbjct 63451 TCAAGAAGCGCGGCCTC-ATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGAC 63393
Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC 42887
||||| || || | |||||||||||||| ||||| || || || | | | | || |
Sbjct 63392 GAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTTTACGCACCTCCGCCGCCGCCCGCAC 63333
Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947
| || | || | || |||| ||||||||| |||| ||| |||||||||||
Sbjct 63332 CC---CGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTC 63276
Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007
|| || |||| ||||| || ||| | ||||||||| || ||||||||| |||||||
Sbjct 63275 ACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATT 63216
Query 43008 CAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACG 43064
||| |||||||||| ||| || || ||| | || | || | | ||| || ||
Sbjct 63215 GAGTTTGTCGCCGACCGTCTGCTCGTCGCC--CTCGGCAACGAGAAGAC-GTACTACTCG 63159
Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124
| |||||||||||||||||||| |||||| | |||||||| ||||||| ||||||
Sbjct 63158 ACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAG 63099
Query 43125 AAGCGCGT 43132
||| ||
Sbjct 63098 TCGCGTGT 63091
>seq4
Length=2551142
Score = 154 bits (170), Expect = 3e-32
Identities = 240/342 (70%), Gaps = 12/342 (4%)
Strand=Plus/Minus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGC---AACGTTCGGCGAG 42701
|| ||||| ||||||||||||| | || | |||||| | ||||| ||
Sbjct 1013586 AAAAAGGCAAACTGGGCGCTCAAGTATAT------TACCGACGAGGTACCGTTCCGCATC 1013533
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
| ||| | || ||| | ||||||||||||||||||||||||| | || || |||||
Sbjct 1013532 CGCCTGATTGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATC 1013473
Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821
|||||||||||| || | | |||| ||| || || || || ||||| ||||||
Sbjct 1013472 TTCTGGCTCAAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCG 1013413
Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881
| |||||||| |||| | |||||||| ||||| |||| | | ||||||| ||||
Sbjct 1013412 CGCGACGAGGGCATGCACACCGACTTTGCATGCCTGCTGTAC---GGGCACCTCAAGCAC 1013356
Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941
| | || |||||| ||| | | || | |||||||| || ||||| ||||||
Sbjct 1013355 CGGTGCCCGCAGGAGCAGGTGCACGAGATTGTGCGCGAGGCCGTCGAAATCGAAAAGGAG 1013296
Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983
||||| ||| | ||||||| ||||| ||||||| |||
Sbjct 1013295 TTCCTGACGGACGCGCTGCCATGCGCCCTGATCGGCATCAAC 1013254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338786851600
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