Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 132 1e-25 seq1 109 1e-18 seq9 87.8 4e-12 >seq6 Length=1958011 Score = 132 bits (146), Expect = 1e-25 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||||||| || || || | || || || ||||| Sbjct 41705 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 41764 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 ||||| ||||| || ||||| || || || |||||||| || ||| |||||||| Sbjct 41765 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTT-GCTCTTCACGTT 41823 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||| || || ||||||||||||||||| ||||||| ||||||||| Sbjct 41824 GTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGAC 41883 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 41884 GAAGATCTGCAT 41895 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| |||| ||| || || ||||| || ||||||| Sbjct 41897 CCTCCGCGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 41956 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| || ||||| || || ||| Sbjct 41957 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG---TCGGGG 42013 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || |||| || ||||| || || | ||| ||| || Sbjct 42014 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCG 42073 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 42074 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123 >seq1 Length=6947394 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 6691105 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6691046 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || |||||||| || || || ||||| Sbjct 6691045 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 6690986 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || || || ||||||||| Sbjct 6690985 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 6690926 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 6690925 AAGATCTGCATTTTG 6690911 >seq9 Length=1289175 Score = 87.8 bits (96), Expect = 4e-12 Identities = 272/413 (66%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 |||||| |||||||||| | | ||||||||| || | ||| | ||||||||| Sbjct 1226767 ATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATGTT 1226708 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 ||||| |||||||| | ||| || || || || || || | |||||||| Sbjct 1226707 GTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCGCC 1226648 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 325521 ||||| || || | | ||| | ||||||||| | || ||| || ||||| | || | Sbjct 1226647 GTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCCTT 1226588 Query 325522 CGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCA 325579 | | | ||||| ||| || ||| || || || || ||| ||| |||| || Sbjct 1226587 CTTGAGGTTGCGTAAGAAGCAGGCGAACATG--ACCTTGCGCTGACCAGGCTTGAGGCCG 1226530 Query 325580 TCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTG 325639 || | ||||| || ||| || |||| | ||||| | || || |||||| Sbjct 1226529 TCGGCAACCGAGGGGATGGAACGAATGTTATCGGCCATGGAGAAGAGGATGAGCTCCTTG 1226470 Query 325640 TCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGT---GGTCAAGTTGATTTCCTGGT 325696 | || ||||| ||| ||| | || ||| ||| ||||||| | | || || Sbjct 1226469 TTGACAAAGTCCTGAAGGGGGAT---GGTCTTAATGTCATGGTCAAGGAAAGTACCAGGC 1226413 Query 325697 TCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAA 325746 | ||| || || || ||||||||||||||| ||||| || | ||||||||| Sbjct 1226412 TTGTACTGGCG-CAGCCACTCCTTGCGATCGTCGGCCTTCTT--CTTGTTGAA 1226363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653870998730