Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq6 132 1e-25
seq1 109 1e-18
seq9 87.8 4e-12
>seq6
Length=1958011
Score = 132 bits (146), Expect = 1e-25
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | ||||||||| || || || | || || || |||||
Sbjct 41705 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 41764
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
||||| ||||| || ||||| || || || |||||||| || ||| ||||||||
Sbjct 41765 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTT-GCTCTTCACGTT 41823
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || ||| || || ||||||||||||||||| ||||||| |||||||||
Sbjct 41824 GTCGATCGTGTCCGACGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAAAGTCTTGAC 41883
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 41884 GAAGATCTGCAT 41895
Score = 118 bits (130), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| ||||| || | || ||||| |||| ||| || || ||||| || |||||||
Sbjct 41897 CCTCCGCGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 41956
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || || || |||||||| || ||||| || || |||
Sbjct 41957 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG---TCGGGG 42013
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||| || |||| || ||||| || || | ||| ||| ||
Sbjct 42014 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCG 42073
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 42074 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 42123
>seq1
Length=6947394
Score = 109 bits (120), Expect = 1e-18
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || ||||| ||||| || | || || || ||||||
Sbjct 6691105 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6691046
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || ||||| || ||||| || || || |||||||| || || || |||||
Sbjct 6691045 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 6690986
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| ||||| ||||| || || || |||||||||
Sbjct 6690985 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 6690926
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 6690925 AAGATCTGCATTTTG 6690911
>seq9
Length=1289175
Score = 87.8 bits (96), Expect = 4e-12
Identities = 272/413 (66%), Gaps = 16/413 (4%)
Strand=Plus/Minus
Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401
|||||| |||||||||| | | ||||||||| || | ||| | |||||||||
Sbjct 1226767 ATCCTTTCCACCCTGCATGCGAGTACCGAACTGACCGTTGGGCTCGAGAAGGTTGATGTT 1226708
Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461
||||| |||||||| | ||| || || || || || || | ||||||||
Sbjct 1226707 GTTGCTGCCGACATAGTTCTGGGCGAGACCAACAATCGTGGACATCAAACTGGCTTCGCC 1226648
Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 325521
||||| || || | | ||| | ||||||||| | || ||| || ||||| | || |
Sbjct 1226647 GTGGTGGTATGCTGTCTTCTCCGAAACGTAACCACCGAGCTGGGCGACCTTGATTTCCTT 1226588
Query 325522 CGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCA 325579
| | | ||||| ||| || ||| || || || || ||| ||| |||| ||
Sbjct 1226587 CTTGAGGTTGCGTAAGAAGCAGGCGAACATG--ACCTTGCGCTGACCAGGCTTGAGGCCG 1226530
Query 325580 TCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTG 325639
|| | ||||| || ||| || |||| | ||||| | || || ||||||
Sbjct 1226529 TCGGCAACCGAGGGGATGGAACGAATGTTATCGGCCATGGAGAAGAGGATGAGCTCCTTG 1226470
Query 325640 TCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGT---GGTCAAGTTGATTTCCTGGT 325696
| || ||||| ||| ||| | || ||| ||| ||||||| | | || ||
Sbjct 1226469 TTGACAAAGTCCTGAAGGGGGAT---GGTCTTAATGTCATGGTCAAGGAAAGTACCAGGC 1226413
Query 325697 TCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAA 325746
| ||| || || || ||||||||||||||| ||||| || | |||||||||
Sbjct 1226412 TTGTACTGGCG-CAGCCACTCCTTGCGATCGTCGGCCTTCTT--CTTGTTGAA 1226363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653870998730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |